LOC117598678


Basic Information

Item Value
gene id LOC117598678
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 22240505 ~ 22242775 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309600.1
tgtttgatgaGTGCAGCTTAAGCCATATAGGGAAATAAACAATTATTACCTGTAGGTAAGCAGATTGAAGGAACATCAGTGGAGATTGTTTGAGCACCTCCTTGTTCTGCATGGTAGCTTATAGGAAAAGGAAACTGGTGTCTTTTTCTTACTATTAAAGAAGCCTTGAAACCATCAGAGCTATTAACAATGAACACAGCTGTGAAGGTTTCCACCTTTGCCAAAAATGTTGCCACTGCAGTCATCATCATTTCAGTTGTTTGCTACGCAGAGaacCTGAAATGGATATCAGATTCTGTCATTAGACTGGACATGGCAGAAAATTCTGTTGATGACCAATTTATAGGCTGCAGAGACACAATGTACAAGCTGATTACAAAGAAGATTCTACCAGAAgagttaaaatgtaataaaaattttaaaaacatttgggAAAAGTACTCAAaatttactgattattttacaagaATAATAAAGGTCTACACAGACGGAGATTCTAAACTTTATAGTCAAACCAATGTTCATTTTGATACAAACGTTCTTGGCCGTGAAATGCGATTTGGCAGGTTTGCATCAACTTCACTTAGAACTAACATGTCACCTACATTTGGCAAAACCTCCTGTTTTAAGGTTACGACATGCTTTGGTGCAAACATAGCCAAAATTTCTGTGTTCCCTAAAGAGGAAGAGGTGCTAGTCCCACCTTTTGAAAAATTCAAAATCACAAAGATTGAAAAAAACCAGATGAACTGTAGTGTAATTTACACTCTACAGAGCACTGGGAGGTTTAGTAAAATGAACTGTGCGctgcttaaataaaaaaaaaatgtagatgcAAATGTGCTGATGTTAATATAGCATCACTGCTAACACTGCTGGATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309600.1 True 882 mRNA 0.36 4 22240505 22242775

Neighbor

gene id symbol gene type direction distance location
LOC113527641 NA coding upstream 36476 22201501 ~ 22204029 (+)
LOC113527624 NA coding upstream 113859 22124336 ~ 22126646 (+)
si:ch211-119c20.2 LOC108274060 coding upstream 151235 22037972 ~ 22089270 (+)
LOC113527221 NA coding upstream 204880 22029089 ~ 22035625 (+)
nat9 nat9 coding upstream 273758 21961118 ~ 21966747 (+)
ca10a ca10,ca10a,LOC107584395,LOC103361575 coding downstream 265643 22508418 ~ 22701836 (+)
pkd1b LOC108273530,LOC108429150 coding downstream 564404 22807179 ~ 22847566 (+)
LOC113527478 LOC108273458,LOC108273472,LOC108429252 coding downstream 606528 22849303 ~ 22853496 (+)
wnt3 wnt3,LOC108273758,LOC107584390,LOC107556586,LOC107723638,LOC107665892,LOC100707095 coding downstream 889708 23132483 ~ 23167487 (+)
hdlbpb hdlbpb,LOC108273755,LOC108430121,LOC107657280,LOC107584388,LOC107733459,LOC105907188 coding downstream 996522 23239297 ~ 23265400 (+)
G200779 NA non-coding upstream 125683 22114406 ~ 22114822 (+)
G200569 NA non-coding upstream 240613 21999686 ~ 21999892 (+)
G200561 rnf157 non-coding upstream 251751 21988186 ~ 21988754 (+)
G200560 NA non-coding upstream 252636 21987520 ~ 21987869 (+)
G200559 NA non-coding upstream 253504 21986362 ~ 21987001 (+)
G200807 NA non-coding downstream 105115 22347890 ~ 22348118 (+)
G201019 NA non-coding downstream 624133 22866908 ~ 22868838 (+)
G201093 NA non-coding downstream 860509 23103284 ~ 23103499 (+)
G201077 NA non-coding downstream 861901 23104676 ~ 23105908 (+)
G201186 NA non-coding downstream 1025852 23268627 ~ 23269419 (+)
LOC113527202 NA other upstream 214024 22013806 ~ 22026481 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other upstream 228201 22008511 ~ 22012304 (+)
G200571 NA other upstream 237231 22002824 ~ 22003274 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other upstream 739576 21457391 ~ 21500929 (+)
LOC113527713 fam196a other upstream 2673821 19526642 ~ 19566684 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 555367 22798142 ~ 22871284 (+)
G201154 NA other downstream 962891 23205666 ~ 23206379 (+)
polr2a polr2a,LOC107733452,LOC107584383 other downstream 1029799 23272574 ~ 23398663 (+)
LOC117595720 LOC107714409 other downstream 1068485 23311260 ~ 23318154 (+)
G201214 NA other downstream 1081298 23324073 ~ 23329571 (+)

Expression


Co-expression Network