LOC117598682 (LOC108273610,LOC108273608,LOC108273529)


Basic Information

Item Value
gene id LOC117598682
gene name LOC108273610,LOC108273608,LOC108273529
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25146669 ~ 25153897 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309604.1
ATGGCCAGCAAGGGCAAACAGTGGGTTCTCCTGGCAGCAGGTTCTAAAGGTTGGAAAGACTACGGTGTCCAGGCCAACGTGTGCCACGCTTACCAGGTCGCACACCAGAATGGCGTTCCAGATGAGCAGATTGTGGTGATGATGTATGATGATATCGCTTATAATCAACAaaatCCCATTCCTGGAAACATAATCAATGTACCAAATGGCCCAAATGTTTACCCTGGGGTTCTAAAGGACTACACTGGAGAGGAGGTATCAGCTGAAAACTTTCTGGCTGTACTACGTGGAGATTCAGCTGCTGTCAAGAAAACAGGACCAAAAAAAGTAATACAAAGtggTGAAAATGATTCCATCTTCATCTACTTATCAGACCATGGAAATAAAGGAATCTTTCACTTTCCTAATTCCACAGGCTCACAGAGGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309604.1 True 429 mRNA 0.44 6 25146669 25153897

Neighbor

gene id symbol gene type direction distance location
LOC113527669 LOC108273607 coding upstream 66840 25063600 ~ 25079829 (+)
lrit2 lrit2 coding upstream 133378 25007848 ~ 25013291 (+)
lrit1b lrit1 coding upstream 143399 24998950 ~ 25003270 (+)
LOC113527566 ikzf5 coding upstream 281988 24861416 ~ 24864681 (+)
bub3 bub3 coding upstream 461515 24677184 ~ 24685154 (+)
LOC113527238 LOC108273610,LOC108261801 coding downstream 1095 25154992 ~ 25162871 (+)
LOC113527655 LOC108274290 coding downstream 106843 25260740 ~ 25270653 (+)
LOC117598570 dusp13,LOC108273859,LOC107748394,LOC107595212 coding downstream 228968 25382865 ~ 25386388 (+)
LOC113524867 LOC108273861,LOC108415359,LOC107676426,LOC107597761,LOC107748324,LOC107718692,LOC104943471,LOC108416695 coding downstream 232938 25386835 ~ 25389881 (+)
LOC117598571 LOC108273860,LOC108415358 coding downstream 236800 25390697 ~ 25394302 (+)
LOC113527241 LOC108261801,LOC108273610 non-coding upstream 11504 25134451 ~ 25135165 (+)
G202286 NA non-coding upstream 35185 25110288 ~ 25111484 (+)
G202273 NA non-coding upstream 57956 25086915 ~ 25088713 (+)
G202218 NA non-coding upstream 84500 24973904 ~ 25062169 (+)
G202215 LOC108273604,LOC107756949,LOC107569511,LOC104927182,LOC103142276,LOC103481437 non-coding upstream 173429 24971620 ~ 24973240 (+)
G202290 NA non-coding downstream 32885 25186782 ~ 25189327 (+)
G202310 LOC106943100,LOC106904307,LOC107373152 non-coding downstream 45813 25199710 ~ 25199947 (+)
G202342 NA non-coding downstream 136844 25290741 ~ 25290965 (+)
G202339 NA non-coding downstream 215433 25369330 ~ 25369655 (+)
G202354 NA non-coding downstream 249945 25403842 ~ 25409006 (+)
LOC113527710 hmx3 other upstream 480061 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 640593 24455659 ~ 24506076 (+)
G201962 NA other upstream 764382 24381787 ~ 24382287 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 1458252 23604837 ~ 23688417 (+)
G201214 NA other upstream 1817098 23324073 ~ 23329571 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 175312 25329209 ~ 25428112 (+)
G202397 LOC108273443 other downstream 343818 25497715 ~ 25498919 (+)
G202374 NA other downstream 344283 25498180 ~ 25502628 (+)
LOC117598538 NA other downstream 845754 25999651 ~ 26005825 (+)

Expression


Co-expression Network