phkg2 (phkg2,LOC107743765,LOC107675026)


Basic Information

Item Value
gene id phkg2
gene name phkg2,LOC107743765,LOC107675026
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12422750 ~ 12430535 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309620.1
CTACCTATTTATcttgctagctggctaatgacAGGTTCAGGGAATTCCTCGTCCTCCAGCGAGGGTGTCAACTTTAATATAGTTTACCTTACGTAGATATTTCAGCCTGTCGCTCCAGCTAATGACTTGTATGATTTAGGGAACTACACTTGCTTCCTCAGGTTGTGGAGATGACGCGTGATCTGATGCTCGGAGAGGAACTGCCCCACTGGGTGGGAGCCAAAGAGTTCCACCAGAAGTACGAGTCCAAGGAGGTCATCGGCAGGGGCGTAAGCAGCGTAGTGCGTAGgtgtgtaaacaaacacacaggacaagAATTTGCAGTGAAGATCATTGAGATCACAGCAGAGAAGATGACTGCCCAGCAGTTGGAGGAGGTGAAGAGCTCAACACTAAAAGAGATCCATGTTCTTAATGTGCTGAAAGGACACCCGTCCATCATCACACTCATTGATTCCTATGAATCTGCAACCTTCATCTTTTTGGTATTTGACCTCATGAGAAGAGGAGAGCTGTTTGACTACTTAACAGAAAAGGTCACTCTCAGCGAAAAAGAAACCAGGAGTATGATGCGTGCTCTTCTGGAGGCAGTCCAGTATCTCCATTCCCTTAATATCATACACCGAGACCTCAAGCCTGAAAATATCCTTCTGGATGACCAGGGTCACATTAAACTATCTGACTTTGGCTTTTCAGTGCAGCTGCAGCCTGGAGAAAAGCTGAGAGAGCTGTGTGGCACTCCGGGCTACCTTGCACCAGAGATTCTGAAATGTTCAATGGATGATACGCATGAAGGATATGGGAAAGAGGTTGACTTGTGGGCTTGTGGTGTGATTCTGTTCACTCTTCTTGCTGGGTCTCCACCCTTCTGGCACCGTAAACAGATGCTGATGCTACGAATGATCATGGAGGGTCGGTACCAGTTTAGCTCTCCGGAGTGGGACGACAGGTCTGATACTGTCAAGGACTTGATCTCAAGGCTTTTAGTGCTGGATCCCTCAGTTCGTCTGACAGCTGAACAAGCCTTAACTCATCCTTTCTTCCTTCAGTACCAAAAGGAGGATGTACGGCTCTTCAGCCCCAGAAAGACATTCCGGGTGTTAATCTTGACAGTCTTGTCCTGTATTCGTATGTACTCTCGCTACAACCGGGCCAGACCTCTGACACGAGAGCTCCTAATGAGGGACCCTTACTCTTTACGAGCTGTGCGCAAACTCATCGATGGCTGTGCTTTCCGCATATATGGACACTGGGTCAAGAAAGGAGAACAACAGAACCGAGCTGCTCTTTTCCAGAACACCACTAAAATTGTTTTACTTGGTCTTGAGGACCTTGAGAGCTAAATGTAATTCTAAACTCTATTTTTAACCTGTTCATTAAGAGTTataatagtatttttattttttttaattcaaacagTTCAGGGAAAGCAGATATTAatccagtcacacacacacacacacacacacacacacactcgaaccACAGtagaattatttattcatgattaatgagaggtactttttttttttgttacgtGTGAGTTATTGAGCTCACTTTTAACTTCTTAgccattttcttttctaatatCTAATCCTAAATTTaactttataaatttttatatcagttcagttttatCACTTTAGTTGTCCTGGTAATTTGACCATTTGTAGAAATGGACAGTAtaaatttgcagaacataaacTAAATGCATAAAAGTTCtgacattttgtcatttatggTTACACAAATGTGTATGATGGTTACATTCCTGCTcactttgtgggtttttttccccttaaatatatttgagtctttttttcatttgactATCAAACACCACGTTTTCATCACTGAGTACTGTATTAACTTCAGATTAAGCTTAATCGGTGTTATCACTGTCAAGACTGCTGTTAtctattattaatgtttaatttatctgTTTTAATATTCTGAATTTTGATTAATCAAATAAATCCTTACATTTTAAGTAAA
>XM_034309621.1
CTACCTATTTATcttgctagctggctaatgacAGGTTCAGGGAATTCCTCGTCCTCCAGCGAGGGTGTCAACTTTAATATAGTTTACCTTACGTAGATATTTCAGCCTGTCGCTCCAGCTAATGACTTGTATGATTTAGGGAACTACACGTTGTGGAGATGACGCGTGATCTGATGCTCGGAGAGGAACTGCCCCACTGGGTGGGAGCCAAAGAGTTCCACCAGAAGTACGAGTCCAAGGAGGTCATCGGCAGGGGCGTAAGCAGCGTAGTGCGTAGgtgtgtaaacaaacacacaggacaagAATTTGCAGTGAAGATCATTGAGATCACAGCAGAGAAGATGACTGCCCAGCAGTTGGAGGAGGTGAAGAGCTCAACACTAAAAGAGATCCATGTTCTTAATGTGCTGAAAGGACACCCGTCCATCATCACACTCATTGATTCCTATGAATCTGCAACCTTCATCTTTTTGGTATTTGACCTCATGAGAAGAGGAGAGCTGTTTGACTACTTAACAGAAAAGGTCACTCTCAGCGAAAAAGAAACCAGGAGTATGATGCGTGCTCTTCTGGAGGCAGTCCAGTATCTCCATTCCCTTAATATCATACACCGAGACCTCAAGCCTGAAAATATCCTTCTGGATGACCAGGGTCACATTAAACTATCTGACTTTGGCTTTTCAGTGCAGCTGCAGCCTGGAGAAAAGCTGAGAGAGCTGTGTGGCACTCCGGGCTACCTTGCACCAGAGATTCTGAAATGTTCAATGGATGATACGCATGAAGGATATGGGAAAGAGGTTGACTTGTGGGCTTGTGGTGTGATTCTGTTCACTCTTCTTGCTGGGTCTCCACCCTTCTGGCACCGTAAACAGATGCTGATGCTACGAATGATCATGGAGGGTCGGTACCAGTTTAGCTCTCCGGAGTGGGACGACAGGTCTGATACTGTCAAGGACTTGATCTCAAGGCTTTTAGTGCTGGATCCCTCAGTTCGTCTGACAGCTGAACAAGCCTTAACTCATCCTTTCTTCCTTCAGTACCAAAAGGAGGATGTACGGCTCTTCAGCCCCAGAAAGACATTCCGGGTGTTAATCTTGACAGTCTTGTCCTGTATTCGTATGTACTCTCGCTACAACCGGGCCAGACCTCTGACACGAGAGCTCCTAATGAGGGACCCTTACTCTTTACGAGCTGTGCGCAAACTCATCGATGGCTGTGCTTTCCGCATATATGGACACTGGGTCAAGAAAGGAGAACAACAGAACCGAGCTGCTCTTTTCCAGAACACCACTAAAATTGTTTTACTTGGTCTTGAGGACCTTGAGAGCTAAATGTAATTCTAAACTCTATTTTTAACCTGTTCATTAAGAGTTataatagtatttttattttttttaattcaaacagTTCAGGGAAAGCAGATATTAatccagtcacacacacacacacacacacacacacacactcgaaccACAGtagaattatttattcatgattaatgagaggtactttttttttttgttacgtGTGAGTTATTGAGCTCACTTTTAACTTCTTAgccattttcttttctaatatCTAATCCTAAATTTaactttataaatttttatatcagttcagttttatCACTTTAGTTGTCCTGGTAATTTGACCATTTGTAGAAATGGACAGTAtaaatttgcagaacataaacTAAATGCATAAAAGTTCtgacattttgtcatttatggTTACACAAATGTGTATGATGGTTACATTCCTGCTcactttgtgggtttttttccccttaaatatatttgagtctttttttcatttgactATCAAACACCACGTTTTCATCACTGAGTACTGTATTAACTTCAGATTAAGCTTAATCGGTGTTATCACTGTCAAGACTGCTGTTAtctattattaatgtttaatttatctgTTTTAATATTCTGAATTTTGATTAATCAAATAAATCCTTACATTTTAAGTAAA

Function

symbol description
phkg2 Predicted to enable ATP binding activity; calmodulin binding activity; and phosphorylase kinase activity. Predicted to act upstream of or within glycogen biosynthetic process and protein phosphorylation. Predicted to be part of phosphorylase kinase complex. Human ortholog(s) of this gene implicated in glycogen storage disease; glycogen storage disease IXc; and liver cirrhosis. Orthologous to human PHKG2 (phosphorylase kinase catalytic subunit gamma 2).

NR:

description
phosphorylase b kinase gamma catalytic chain, liver/testis isoform

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005978 glycogen biosynthetic process biological_process
GO:0005964 phosphorylase kinase complex cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004689 phosphorylase kinase activity molecular_function

KEGG:

id description
K00871 PHKG; phosphorylase kinase gamma subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309620.1 True 1995 mRNA 0.41 10 12422750 12430535
XM_034309621.1 False 1983 mRNA 0.41 10 12422750 12430535

Neighbor

gene id symbol gene type direction distance location
nfe2l1b nfe2l1,nfe2l1b,LOC107565927 coding upstream 6960 12407353 ~ 12415790 (+)
cdk5rap3 cdk5rap3,LOC107754106 coding upstream 24617 12390793 ~ 12398133 (+)
pnpo pnpo,LOC107565739,LOC102778316 coding upstream 39183 12378478 ~ 12383567 (+)
tbx21 tbx21 coding upstream 62107 12348960 ~ 12360643 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 coding upstream 105646 12269685 ~ 12317104 (+)
rnf40 rnf40,LOC108273672,LOC107565773,LOC107754088,LOC107675023 coding downstream 4000 12434535 ~ 12446996 (+)
znf668 znf668,LOC108426467,LOC103039553,LOC107754087,LOC107675019,LOC107743759 coding downstream 32327 12462862 ~ 12466434 (+)
LOC117598642 LOC108273679 coding downstream 36050 12466585 ~ 12468184 (+)
si:rp71-1c10.8 LOC108274317 coding downstream 53599 12484134 ~ 12487553 (+)
valopb valopb,LOC108273592,LOC108426422,LOC103038101,LOC107754082 coding downstream 65133 12495668 ~ 12502869 (+)
G195084 NA non-coding upstream 48470 12374010 ~ 12374280 (+)
G195083 NA non-coding upstream 51465 12371056 ~ 12371285 (+)
G195047 NA non-coding upstream 172995 12249060 ~ 12249755 (+)
G195016 NA non-coding upstream 246631 12174394 ~ 12176119 (+)
G195002 NA non-coding upstream 277543 12145001 ~ 12145207 (+)
LOC117598562 NA non-coding downstream 21358 12451893 ~ 12453678 (+)
G195225 NA non-coding downstream 119599 12550134 ~ 12550360 (+)
G195287 NA non-coding downstream 212733 12643268 ~ 12643526 (+)
G195301 NA non-coding downstream 227570 12658105 ~ 12658323 (+)
G195512 NA non-coding downstream 413790 12844325 ~ 12844561 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 337391 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 801481 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 1136482 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 1174537 11233590 ~ 11248213 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 1776203 10644826 ~ 10646547 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 42144 12472679 ~ 12473983 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 528400 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 1052766 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 1583038 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 1856824 14287359 ~ 14324281 (+)

Expression


Co-expression Network