itga3b (itga3)


Basic Information

Item Value
gene id itga3b
gene name itga3
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6546941 ~ 6594390 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309642.1
gtgtgtgtgtgtgtgcgcgcgcgcgcgcgacTGAGATTGAGTGCGCACGGTTCCTATGGAGTGTGAGTGAGACTCTGGTCTTGTTCAGAGTGAGACTGAGGGACAGAAGGAGACGTAAAAATGGCTCCCAGCACTCTGCTGCACTTCTGCTTCTGCATAATGTACACCGCGCAAAGCTGTTGTGGATTTAATGTGGATGTCCGCTTCCCGGTTATAAAGGAAGGAAAAACCAAAGGCAGCTTTTTCGGATTCTCCGTAGCGCAGCACAGACTGACGGAAAAGCCCAGGAAGTACCTACTCCTGGCAGGAGCACCCAAAGAGAAAGCCTTATCACAGCTGAAAGTGAACGAGACCGGAGCTATCTACTCATGCCCCATTACCACAGACCTGACAGACTGCACCAGAGTCGACCTCATCACCTCAATGGATTCATCTGAGATGATAGAAGGCATGTGGCTTGGAGTGACTGTAGCCAGTCAAAGAGAGCATCCTGGTGGACGAGTGTTGGCATGTGGCCACCGCTATGTGAAAATAGTGCAGGGTGGAGGAGAGGAACAGCGGCGGATGGTGGGCAAATGCTTCGTCCGGGGTAACGACCTGAGCTTTGACCGCAATGACTTATGGCAGGACCACTCCTATGAAGTGTGCAACCCCAACAAAGACATGGAGATGGAAGGCATGTGTAACATGGGCATTTCCGCCGGCATGACGGACAGCGACGTCTACATCGGCTGCACGGGGAGTTTCGAATGGCAGGGCAATGTGCATGTTACCTGGAGAGACACAACCCCAGACAACTCCTGGGATTACAGTGAAAAAGACTTTGGTTCGCTAAAGAAGCGGAACAGCTACATGGgctACTCTGTGACAGAAGACATGAAGTTGTTGAGCAGAAAAGAGTACACAGTGGTTACAGGGGCTCCCAGAGACGACTCCAGGGGTTCAGTGACGCTGGCGGTGAAAGGGCCTTCAAACCTCGAGCCTGCGCTTGTGATCCCTGGAGAGCAAGTGGGCTCTTACTTTGGGAGCAGTATAGCAGTGACAGATCTCAACAATGACGACTGGAATGACCTGATAGTGGGAGCGCCGTTCTACTTTGACCGCTACAAAGAGCAAGGTGGAGCAGTGTACATTTTCATGAACGAAAACGGATCTTTCCAGATCAAGCCTAGTGTTGTCCTGAACGGTGCCAAGGGTTCTGCGTTTGGATTCTCTGTGGCAGCTATAGGAGATGTAAATCAAGATGGATTCCAAGATTTTGCAGTTGGAGCTCCGTTCCATGATTCTGGGAAAGTCTATATATGGATGGGGAACAAGGAGGGAATAACAAATGTTCCCAGTCAGGTTATTGAAGGGAAGTCGTTGGGCTCTGGTGGATTCCAGACATTCGGTTATTCCCTCAGTGGAGGCATGGATATGGACGGCAACAAATATCCTGACATCTTAGTCGGCTCTCTCGATGACCGTATAGCACTTCTGAGGGCACGTCCAGTTATCCATTTATCCAGAAACTTCACAGTAGAGCCAAAGATTGTGGATCCCAGCCAGTGCACGGACACTTGtataactGCAAAGATGTGTTTTACTTACACACTGAGCAACGGAAACCGCAACTTCAAGAAGGATATTAcTGTAAAATACACCGTAGAGGCGGACCGCAATCGGCGGAGCCCAAGAGTGCAGTTCCTCAATGGCAAAAGCACGTACACAGGCCTCCTGACCTTCTCCTCTCCAACCTGCCAGGAGCTCAAGCTTCAAGTAAATGAGCAGATAACAAATAAACTGGAGCCGGTTGTGTTTCTCCTGAACGTTTCTCTGAACGAGGCTGCAGTGGAGCCCCAACAGACTCTACAGGACCTTGATGCATTCCCTATGCTCAGTGGCCAACAGCAGCTGACTGAGAAAACCGAGATTAACTTCCAGAAGGAGTGTGGCTCTGATAATAAATGCAGCAGTAATCTGCAAGTGAAGGCGCAGTTTGCCAGTGAACAGCAAACCGTATTTCCCAGCGTGGATGATAGACAATCGATGGAATATAACAACAGCGTCAAGAAGCTGGTGCTGTTAGTGGAGGTGAGCAACGTGCCTGAGAGCGGCAGAGAGGCTGAGGACGCACATCAGGCCATGCTCAACATCACCGTTCCCCCTACACTCACCTACTCTGGCTTTCGTTCCAAGgaaattGAGTGTTATGCTAACAAGACTGTGATGTGTGATCTTGGAAACCCATTTAAGAGCAACAGAAAGATTTCCTTTCCGATCATATTTGAAACttttattacactttacacaGAGCAGATAGCAGTGCAGCTCCAGCTGTCTACTCTGAGTGAACAGAGTGATCTGTACCCTGTGCCAGTTGTCCTCAATGTGGAGAACACAATCCTCACCTCTTTCTCTATAGAGAACTCAGAGGTGAACACGTATTTTAGTGGTAAAGTTGTGGGTGAGTCTGCCATGAACAGCACAAGTGACATCGGCAGTCTAGTGGAATACGTCTTCCAGGTGAGTGTGGTGGGAGAACCCCTGGGAGTGTTGGGAACTCTGGTGGTGGATTTTAAATGGCCGATTGAGGTGACAAACGGGAAATGGCTGCTGTATCTGACGGAGATCCTAACCAACGGGACACCTGAGTCACACTGCGTTCCTCCTGGAAAAATTGTTAATCATCTGAACTTAACACTGTCAAAGAAGAGTTCGAATCGGCACAAGCGAGACTTGGACAACAGCCTGCCTCTCACTGAAGCAGCTGTAACCCTCCTCACTCCACGGAAAGAGACCTACCTGCTGGACTGTGCGGTGCAGACGGCTCGCTGCGTGACCTTCTCGTGCCCGCTGAGGAACATGTCCACTGCAGCCTCGCTCACCGTCAGAGCCCGTGTGTGGAACAGCACCATGCTGGAGGATTTTGCCAACGCTTTTCGGGTGATCGTGAAAGGGAACGCCACGCTGAGGCTGGAGACTGACAAACCCACCATCAAGATGAAAACTGAAAATCGAGAGTTTGTGGTGAACATTGATCCTGTTCCAGGAGAAGAAACCCCATATAACGTTCCGTTATGGATATATATCATTGCAGGCATAGCAGGAATCCTCTTATTAGGCATCATCAGCCTCATCCTGTGGAAGtgTGGGTTCTTTAAAAGAGCTGTCTACTACAAGGTGATGCCTAAGTACCACGGAGTGAAAATACGCAAGGAGGAGAGGTACAAGTTGAACAGGGCTTTCCAGCCTGAGCACGAGCTCAACAAAAAACTCTGGGTCACCAACTGGACAGAAGTGCAAGAATATTACTACTGAACTTGGAAAGCATCCGCTCAGCTGCTGCTGTAAAGGAATGCAGTGGCTGGAGGTTTCCTTTACTAACTGAAACAGACTCTGGGGCTTTGGCTTTTTGGGCCAACATTTACACATGATAAAGAATTGAGTACTGGGTGAAGTGTGGTGTTGTTCTTGtcgtcgttgttgttgttgtttgttgttgtttggtgCAATATTGTGTTGCAGATCAACAAGTTTTCATGACTGAAACCGTCCAGCATTCTCTCAGACCCAGTCTGGGACGtgtatctttattatttttttattgatttttccaATACTGAAAGTATTGCAGAACATTTTCTCACGGATATCTTTTGTGTATTATAGTTGATATTATAGAATGATGTTCAGTTTAtggctttttttaataattgtgtcTTTAAATGCACAATACTACAAGATGATGCTCACACTTCAACTGACACTGTGAGAGACATTTCTTTTTCAGAGCACTCTGACCTTAAACTATGAATGATGAGATTGCACAGATTGCAAGTGTTACAGTTTTGTAGCTCGTATGAAATACATTTCATCTCTTTGTCTGCCCGACAGATCTAGAAGACACAACGACACTGCCTGGTAACGAGGCACACAGTGAATTATAGCACAAGGAAGAGTACCACACATCACTGaactgatatttattttatatgtgcGTATATGACTAATGAGAGTCAATACACTGGAGAATATAATGTtgctttttactgttttatgtGCTTCTCTGTAAGCTTGTAATGCACAGTAAGATTATCATTCCACTACAATCTGGTTTAAAGTAGAGTAGGTCAAAAAAGATCTGAAACTTCACGCGTTACTTGTCATGACTTTCTTCTTGCGTCGTTCTGTGAAAGAATGTCTATCCATCGGTTTATGACGCTGTCATTAGGTCCTGCTGTAGCACTAGAAAAGGTTTGGGTAAATCATTAGGTCCGAATCAGGACTGATATATTATTAGTATATCCAGAAATGATGATTCAGTAATTCATATAAGAGTCAGAAAGTACATGTGGTTCTTCTTTTATACACTCcagatattaaaatgttttgtacataaA
>XR_004579320.1
gtgtgtgtgtgtgtgcgcgcgcgcgcgcgacTGAGATTGAGTGCGCACGGTTCCTATGGAGTGTGAGTGAGACTCTGGTCTTGTTCAGAGTGAGACTGAGGGACAGAAGGAGACGTAAAAATGGCTCCCAGCACTCTGCTGCACTTCTGCTTCTGCATAATGTACACCGCGCAAAGCTGTTGTGGATTTAATGTGGATGTCCGCTTCCCGGTTATAAAGGAAGGAAAAACCAAAGGCAGCTTTTTCGGATTCTCCGTAGCGCAGCACAGACTGACGGAAAAGCCCAGGAAGTACCTACTCCTGGCAGGAGCACCCAAAGAGAAAGCCTTATCACAGCTGAAAGTGAACGAGACCGGAGCTATCTACTCATGCCCCATTACCACAGACCTGACAGACTGCACCAGAGTCGACCTCATCACCTCAATGGATTCATCTGAGATGATAGAAGGCATGTGGCTTGGAGTGACTGTAGCCAGTCAAAGAGAGCATCCTGGTGGACGAGTGTTGGCATGTGGCCACCGCTATGTGAAAATAGTGCAGGGTGGAGGAGAGGAACAGCGGCGGATGGTGGGCAAATGCTTCGTCCGGGGTAACGACCTGAGCTTTGACCGCAATGACTTATGGCAGGACCACTCCTATGAAGTGTGCAACCCCAACAAAGACATGGAGATGGAAGGCATGTGTAACATGGGCATTTCCGCCGGCATGACGGACAGCGACGTCTACATCGGCTGCACGGGGAGTTTCGAATGGCAGGGCAATGTGCATGTTACCTGGAGAGACACAACCCCAGACAACTCCTGGGATTACAGTGAAAAAGACTTTGGTTCGCTAAAGAAGCGGAACAGCTACATGGgctACTCTGTGACAGAAGACATGAAGTTGTTGAGCAGAAAAGAGTACACAGTGGTTACAGGGGCTCCCAGAGACGACTCCAGGGGTTCAGTGACGCTGGCGGTGAAAGGGCCTTCAAACCTCGAGCCTGCGCTTGTGATCCCTGGAGAGCAAGTGGGCTCTTACTTTGGGAGCAGTATAGCAGTGACAGATCTCAACAATGACGACTGGAATGACCTGATAGTGGGAGCGCCGTTCTACTTTGACCGCTACAAAGAGCAAGGTGGAGCAGTGTACATTTTCATGAACGAAAACGGATCTTTCCAGATCAAGCCTAGTGTTGTCCTGAACGGTGCCAAGGGTTCTGCGTTTGGATTCTCTGTGGCAGCTATAGGAGATGTAAATCAAGATGGATTCCAAGATTTTGCAGTTGGAGCTCCGTTCCATGATTCTGGGAAAGTCTATATATGGATGGGGAACAAGGAGGGAATAACAAATGTTCCCAGTCAGGTTATTGAAGGGAAGTCGTTGGGCTCTGGTGGATTCCAGACATTCGGTTATTCCCTCAGTGGAGGCATGGATATGGACGGCAACAAATATCCTGACATCTTAGTCGGCTCTCTCGATGACCGTATAGCACTTCTGAGGGCACGTCCAGTTATCCATTTATCCAGAAACTTCACAGTAGAGCCAAAGATTGTGGATCCCAGCCAGTGCACGGACACTTGtataactGCAAAGATGTGTTTTACTTACACACTGAGCAACGGAAACCGCAACTTCAAGAAGGATATTAcTGTAAAATACACCGTAGAGGCGGACCGCAATCGGCGGAGCCCAAGAGTGCAGTTCCTCAATGGCAAAAGCACGTACACAGGCCTCCTGACCTTCTCCTCTCCAACCTGCCAGGAGCTCAAGCTTCAAGTAAATGAGCAGATAACAAATAAACTGGAGCCGGTTGTGTTTCTCCTGAACGTTTCTCTGAACGAGGCTGCAGTGGAGCCCCAACAGACTCTACAGGACCTTGATGCATTCCCTATGCTCAGTGGCCAACAGCAGCTGACTGAGAAAACCGAGATTAACTTCCAGAAGGAGTGTGGCTCTGATAATAAATGCAGCAGTAATCTGCAAGTGAAGGCGCAGTTTGCCAGTGAACAGCAAACCGTATTTCCCAGCGTGGATGATAGACAATCGATGGAATATAACAACAGCGTCAAGAAGCTGGTGCTGTTAGTGGAGGTGAGCAACGTGCCTGAGAGCGGCAGAGAGGCTGAGGACGCACATCAGGCCATGCTCAACATCACCGTTCCCCCTACACTCACCTACTCTGGCTTTCGTTCCAAGgaaattGAGTGTTATGCTAACAAGACTGTGATGTGTGATCTTGGAAACCCATTTAAGAGCAACAGAAAGATTTCCTTTCCGATCATATTTGAAACttttattacactttacacaGAGCAGATAGCAGTGCAGCTCCAGCTGTCTACTCTGAGTGAACAGAGTGATCTGTACCCTGTGCCAGTTGTCCTCAATGTGGAGAACACAATCCTCACCTCTTTCTCTATAGAGAACTCAGAGGTGAACACGTATTTTAGTGGTAAAGTTGTGGGTGAGTCTGCCATGAACAGCACAAGTGACATCGGCAGTCTAGTGGAATACGTCTTCCAGGTGAGTGTGGTGGGAGAACCCCTGGGAGTGTTGGGAACTCTGGTGGTGGATTTTAAATGGCCGATTGAGGTGACAAACGGGAAATGGCTGCTGTATCTGACGGAGATCCTAACCAACGGGACACCTGAGTCACACTGCGTTCCTCCTGGAAAAATTGTTAATCATCTGAACTTAACACTGTCAAAGAAGAGTTCGAATCGGCACAAGCGAGACTTGGACAACAGCCTGCCTCTCACTGAAGCAGCTGTAACCCTCCTCACTCCACGGAAAGAGACCTACCTGCTGGACTGTGCGGTGCAGACGGCTCGCTGCGTGACCTTCTCGTGCCCGCTGAGGAACATGTCCACTGCAGCCTCGCTCACCGTCAGAGCCCGTGTGTGGAACAGCACCATGCTGGAGGATTTTGCCAACGCTTTTCGGGTGATCGTGAAAGGGAACGCCACGCTGAGGCTGGAGACTGACAAACCCACCATCAAGATGAAAACTGAAAATCGAGAGTTTGTGGTGAACATTGATCCTGTTCCAGGAGAAGAAACCCCATATAACGTTCCGTTATGGATATATATCATTGCAGGCATAGCAGGAATCCTCTTATTAGGCATCATCAGCCTCATCCTGTGGAAGTGTGGTTTCTTTAAACGTGCCAGTCGAAGGGAGATGTACGAAGCCAAGGCCCAAAAAGCGGAGATGAAGATACAGCCATCTGAGACAGAGAGGCTGACTGAGGACTACTGAGACCGTACGGGGGCCTCCATTGGCCCCCTGGTGTCCCCTGTTGGTGCCCCTCGtgTGGGTTCTTTAAAAGAGCTGTCTACTACAAGGTGATGCCTAAGTACCACGGAGTGAAAATACGCAAGGAGGAGAGGTACAAGTTGAACAGGGCTTTCCAGCCTGAGCACGAGCTCAACAAA

Function

symbol description
itga3 Enables protease binding activity and protein heterodimerization activity. Involved in several processes, including animal organ development; positive regulation of protein localization to plasma membrane; and regulation of transmembrane receptor protein serine/threonine kinase signaling pathway. Located in cell surface and filopodium membrane. Part of integrin alpha3-beta1 complex.

NR:

description
integrin alpha-3

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0033334 fin morphogenesis biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06482 ITGA3, CD49c; integrin alpha 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309642.1 True 4382 mRNA 0.47 25 6546941 6594390
XR_004579320.1 False 3416 misc_RNA 0.50 26 6548071 6594390

Neighbor

gene id symbol gene type direction distance location
abi3b LOC108273397 coding downstream 33856 6507850 ~ 6513085 (-)
LOC113527434 tnks2,LOC108274191,LOC108431390,LOC107654041 coding downstream 42212 6465015 ~ 6504729 (-)
tbc1d12b tbc1d12,LOC107708937,LOC107743959,LOC107664632,LOC107654040 coding downstream 86582 6437679 ~ 6460359 (-)
noc3l noc3l coding downstream 110935 6417476 ~ 6436006 (-)
fra10ac1 fra10ac1,LOC108274300,LOC107654038,LOC107743956,LOC107664625,LOC107557362 coding downstream 246962 6285060 ~ 6299979 (-)
dlx4b LOC108274309 coding upstream 42965 6637355 ~ 6646574 (-)
kat7b kat7,LOC108443263,LOC107598609,LOC107739754,LOC107708935,LOC107654043 coding upstream 133191 6727581 ~ 6740582 (-)
g6pca.1 LOC108274343 coding upstream 152662 6747052 ~ 6752732 (-)
aarsd1 aarsd1,LOC107695514,LOC107739756,LOC107708900 coding upstream 162395 6756785 ~ 6766100 (-)
a1cf a1cf,LOC107695528,LOC107708930,LOC107654048 coding upstream 242047 6836437 ~ 6847966 (-)
G192012 NA non-coding downstream 688 6545032 ~ 6546253 (-)
G191947 NA non-coding downstream 58202 6463488 ~ 6488739 (-)
G191950 NA non-coding downstream 65772 6479767 ~ 6481169 (-)
G191949 NA non-coding downstream 68124 6478189 ~ 6478817 (-)
G191788 NA non-coding downstream 251148 6293530 ~ 6295793 (-)
G192014 dlx3 non-coding upstream 27080 6621470 ~ 6622643 (-)
G192070 NA non-coding upstream 195476 6789866 ~ 6790153 (-)
G192061 NA non-coding upstream 201721 6796111 ~ 6796506 (-)
G192062 NA non-coding upstream 205252 6799642 ~ 6800076 (-)
G192075 sgms1 non-coding upstream 213815 6808205 ~ 6809758 (-)
LOC113527291 LOC108274042 other downstream 755671 5768528 ~ 5791270 (-)
G191430 NA other downstream 932987 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 1056016 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 1483523 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 1594082 4949163 ~ 4952859 (-)
ipmkb ipmk other upstream 805610 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 986960 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1006828 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2253272 8847662 ~ 8857748 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 2773827 9368217 ~ 9419487 (-)

Expression


Co-expression Network