LOC113527805


Basic Information

Item Value
gene id LOC113527805
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9634877 ~ 9635067 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402888.1
ATCACTTCTCTGCCTTTTGGCTAAGATCAAGTGTAGTATCtgttcttatcagtttaatGTCTGTTGCGTCCCCTATCCGGGGACCATATATTAAATTGATTATTTGAACAGGGAGATGGAATAGAAGGTTGCTCAGTCCACTCCACGCATCAGCCCAGTATTGCAGTGCTTCTGGGAATGATGCACCCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402888.1 True 191 ncRNA 0.45 1 9634877 9635067

Neighbor

gene id symbol gene type direction distance location
plxdc1 LOC108274329,LOC108424883 coding upstream 7418 9606131 ~ 9627459 (+)
LOC113527682 LOC108273946 coding upstream 75500 9523356 ~ 9559377 (+)
trnar-ccu_4 NA coding upstream 125081 9509724 ~ 9509796 (+)
trnad-guc_5 NA coding upstream 368543 9266263 ~ 9266334 (+)
trnad-guc_4 NA coding upstream 370032 9264774 ~ 9264845 (+)
plcd3b LOC108273813,LOC108424888 coding downstream 72616 9707683 ~ 9722874 (+)
nmt1b LOC108273814,LOC108424889 coding downstream 88942 9724009 ~ 9728981 (+)
svild si:dkeyp-94b4.1,LOC108273812,LOC107758427 coding downstream 97293 9732360 ~ 9786384 (+)
znf281b znf281 coding downstream 206316 9841383 ~ 9848378 (+)
muc13b NA coding downstream 220667 9855734 ~ 9869864 (+)
G193509 NA non-coding upstream 47058 9587165 ~ 9587819 (+)
G193458 NA non-coding upstream 118738 9515921 ~ 9516139 (+)
G193390 NA non-coding upstream 248483 9386143 ~ 9386394 (+)
G193386 NA non-coding upstream 254762 9379273 ~ 9380115 (+)
G193168 NA non-coding upstream 450788 9159433 ~ 9184089 (+)
G193542 NA non-coding downstream 17105 9652172 ~ 9653260 (+)
G193544 NA non-coding downstream 59842 9694909 ~ 9780955 (+)
G193645 NA non-coding downstream 188980 9824047 ~ 9824468 (+)
G193646 LOC108273498,LOC107727700 non-coding downstream 190360 9825427 ~ 9826864 (+)
LOC117598497 NA non-coding downstream 509286 10144353 ~ 10148786 (+)
mrpl58 mrpl58 other upstream 119261 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 121042 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 122246 9512560 ~ 9512631 (+)
trnaq-cug_13 NA other upstream 122476 9512169 ~ 9512401 (+)
G193383 LOC108273473 other upstream 264962 9368243 ~ 9369915 (+)
arhgap23b LOC108273815 other downstream 20220 9655287 ~ 9691595 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other downstream 1009759 10644826 ~ 10646547 (+)
si:ch73-139e5.4 LOC108273417 other downstream 1598523 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 1651130 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 1978832 11613899 ~ 11621269 (+)

Expression


Co-expression Network