LOC113535197 (LOC108273631)


Basic Information

Item Value
gene id LOC113535197
gene name LOC108273631
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 135208 ~ 139734 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403575.2
ACAAAAGTACACTTTCTATAAAATCTTAATCTACAAAGATGTCAAGGATTTCTGAGTGTTTGAGTACAGTATGATGCTCTTTTACACCAGTATAAACACCCCAGTGATTCACTGCCTCCTGGTTTTAGCTGCACGGGTTTGTAAAGCCAGCTGATAGATACAGCAGTGAGGACTGTCCTTCCCTTCTCTGGGCTTCTGGGCTCTTCACCTCCAGCCTGTGGCACTTCTCCGCTCCGCAGTCCACCCCACTGCTCGCTGACCCCAACACTGCGGTGCCATGTGCATCCCAATGACTTCACCAGTGGGCAGCTTTAGTACATTTAAACCACAGTTTACAATTAAAGCTCCAAAACCAGCCACAGGCCGTCATGTGGAGATTGAGAAGGAGATCTGGACAAAACGTGAAAAGGATTTCTAATTTGGGCTCAAGAAGAGAGAGCGAGTGAAAAAGAGGAGAAGTCAGAGAACACAAACAGTCTACTGACGAAGAACACGCCTTTGACGTCGTCCACTCCGACCAGCATGTCTGGTGTTAATCGATACACACTGAGCTGCAGGAGATCGAAGCCGCTGGCGCTCAGACTTGCACAGACCTGAGCCTCATCCAGTGGTACGACAGGGATCCGAACATCAGGAGCTGCCATGTAAAAGCTCTCCCCCAGAGCTCCAATGAGCAGGAGGTGACCACCATTACGCAGGAGGCTGGACAGGTTGCGTAGTGCGTGAGTGAACGAGGAAACGTCAGGACTCACACTTTCAAGGCAGAACGAGGACACGAGGCAGTCAGCACCGGAAGCAGGCAAAGATCCGGGTGGGAATGGGAACGGGTGGTGAACGTTAACAGGAAAAATATCTGTCACCACTGAACGAAGCCTCTCTGCTTTCTCTTGCCATGCGGAGGAACTGTGTTAAAGCATTAGGTTCATTCatgttactgtacattttaaaagatataCAGTCTACAGAAAAAACTGATAGGTTAAAAGACTTGCCATCATAAAGTACTTGCAAAGTAAAGTGACCCTACTACcaagaaatatttatttcagcCATTAGGGACAAAAAATTGCTTGAACATTTCACAAACagctaaaaatgaaataatatggAGTTTGGAGGCTTATGTTTTTGGAAGTATTTGAACATGAATTCCATATATTTGAATTCTACACATTACGTTATATTAAGTTTTTATTGAGTGAACAAACTCAAGCTTTTAATGATCACAGTTGTCTCTCACTCTCGTGTTCATGAAGTCAAGTCAAGAGACAGAGTAGAGTGGAGTCAAAACAGAAGATATGAACCGTAATGATTAACTCATTAGCATCTACAGTTTTTATGTTCTACAGAAAGTCAGCAATGTTAGCATAGCCTAACTAGCTAGAACATTACCAGAATAGTTACACTGGGAATcaagtgtttaacattactgtaGAAAATAAGCTATTTTTTAGTAGAACATGAAAGAAATGATTTGCTTGAATAGTGAAAGTGTGTACTTTTCCTGGGAATCCCAGACACCTAATTTAGATCTAGACCTAATTTAGACctaatttagatttttatttctcattttttttaaatctcaaagcTGTAACAGTAATTTAAAactatatgtttttaaaagcaaatctTACACTTAAACCCAAgttcaaaacacagaaaaagcactggcaaaatgtatataaattgaaattcatattcagatacTTCTGTCAGCTTCCGGACTCCATACAATATGATGTCAagtgtaaatactgtatttttgaATAAAGAGGATCAATAAGAGACAGCCTTAA

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403575.2 True 1799 lncRNA 0.41 3 135208 139734

Neighbor

gene id symbol gene type direction distance location
grid1b grid1,grid1b,LOC106578986,LOC106589364,LOC102194564 coding upstream 199332 339066 ~ 620756 (-)
LOC117598555 NA coding upstream 493269 633003 ~ 636382 (-)
waplb wapl,LOC108435041 coding upstream 553214 692948 ~ 718933 (-)
vps35l c13h16orf62,cunh16orf62,zgc:163107,cssa28h16orf62 coding upstream 728303 868037 ~ 879127 (-)
becn1 becn1,atg6 coding upstream 742960 882694 ~ 888949 (-)
G188908 NA non-coding upstream 367174 506908 ~ 508671 (-)
G188909 NA non-coding upstream 369297 509031 ~ 511009 (-)
G188918 NA non-coding upstream 393773 533507 ~ 534276 (-)
G188923 NA non-coding upstream 405890 545624 ~ 773583 (-)
G188929 NA non-coding upstream 551865 691599 ~ 784981 (-)
LOC117598518 NA other upstream 496763 636497 ~ 638042 (-)
c12h10orf88 c13h10orf88 other upstream 609004 748738 ~ 834760 (-)
G189180 NA other upstream 1425156 1564890 ~ 1565260 (-)
G189199 NA other upstream 1428552 1568286 ~ 1571073 (-)
LOC113534879 NA other upstream 1621100 1760834 ~ 1773520 (-)

Expression


Co-expression Network