LOC113535322


Basic Information

Item Value
gene id LOC113535322
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 243923 ~ 254748 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403586.2
atcgtcgtctcttcactccactgatctctgttcacgctaACATCGAGAGAGAACCTGGAGGAGCTTGATTAACCTTCTCCAGCACGTGGACACGTGAGATGCTCAGGACTACATGGATGGCTGGAAATCCAACAGTGCTTTTAATTAGCTTTCTGAGGAGTTCCTGAGGCTAATGCTAGCTCGGGCTCTTACACATCGCTGGCGTCTTAACCATGTGGAAGGATTTAACAGATAAATTGTGTGTTTGCTGCTGCCTCTCTGCAGGCGTGAGCTCCAGTGAACATGCATGCCAGCGCGTAATGGCGCAATTATGGCGAACACAGCGAGACTCCATCCCCAAGCTTGAAGGCTCTATTCAGAAGTGGTCATTAGTAAGGAGAGGATCCTTGGCCTCAGGGTCTGGACACAGAGGAACccgctaacacacactctcctccgCACAGCACACAAGCCCAATTCTTCTAAGTGTTGTGTGCTGTTGCTAAGCAACCCCAACGACTAACATCAGATGCCTGGTACGTGAGAGAAAGAACCAAGTGGATGTTTATGAGTTTTAGGAGTGCAGGGATTAGGAGGAAGATCCCAGGTTTGGAGTAGAAGCTATTTATCGACAGTgttacaaggtttttttttagaatctCAGAGGAGCCTCACATAACATCACACACCTTAATCTGTAGAATgttcttgattaattttctatagcagcaactctgacagtagtgcagcagcaaatcacaggtttactttaatgtgctcgttctaatactttgttttttctgtaaggtgatgtttatttaacatttatggaatgagtctccagtgtcagtgctttgtaacagtcatgccTAAGTCTAAAAACGTGAAGTCTTTTTGACATCTtcaggagtttacactttgaaGTGTCtccataacatgacaagcttaggagagaggaaaaagcagAAGATGAGCGAGCGACTGTGTGTAATCATTATATAAACATTGTGCTATAGTGTAactaagaacaggaactaaaatcATGAGCAGCAAACAGATATTTCAGCCCCTTATTTTGAATGTCTGTGAATTAGatgcaataaaatact
>XR_004579155.1
atcgtcgtctcttcactccactgatctctgttcacgctaACATCGAGAGAGAACCTGGAGGAGCTTGATTAACCTTCTCCAGCACGTGGACACGTGAGATGCTCAGGACTACATGGATGGCTGGAAATCCAACAGTGCTTTTAATTAGCTTTCTGAGGAGTTCCTGAGGCTAATGCTAGCTCGGGCTCTTACACATCGCTGGCGTCTTAACCATGTGGAAGGATTTAACAGATAAATTGTGTGTTTGCTGCTGCCTCTCTGCAGGCGTGAGCTCCAGTGAACATGcaGCATGCCAGCGCGTAATGGCGCAATTATGGCGAACACAGCGAGACTCCATCCCCAAGCTTGAAGGCTCTATTCAGAAGTGGTCATTAGTAAGGAGAGGATCCTTGGCCTCAGGGTCTGGACACAGAGGAACccgctaacacacactctcctccgCACAGCACACAAGCCCAATTCTTCTAAGTGTTGTGTGCTGTTGCTAAGCAACCCCAACGACTAACATCAGATGCCTGGTACGTGAGAGAAAGAACCAAGTGGATGTTTATGAGTTTTAGGAGTGCAGGGATTAGGAGGAAGATCCCAGGTTTGGAGTAGAAGCTATTTATCGACAGTgttacaaggtttttttttagaatctCAGAGGAGCCTCACATAACATCACACACCTTAATCTGTAGAATgttcttgattaattttctatagcagcaactctgacagtagtgcagcagcaaatcacaggtttactttaatgtgctcgttctaatactttgttttttctgtaaggtgatgtttatttaacatttatggaatgagtctccagtgtcagtgctttgtaacagtcatgccTAAGTCTAAAAACGTGAAGTCTTTTTGACATCTtcaggagtttacactttgaaGTGTCtccataacatgacaagcttaggagagaggaaaaagcagAAGATGAGCGAGCGACTGTGTGTAATCATTATATAAACATTGTGCTATAGTGTAactaagaacaggaactaaaatcATGAGCAGCAAACAGATATTTCAGCCCCTTATTTTGAATGTCTGTGAATTAGatgcaataaaatact

Function

GO:

id name namespace
GO:0005516 calmodulin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403586.2 False 1088 lncRNA 0.43 3 243923 254748
XR_004579155.1 True 1091 lncRNA 0.43 3 243923 254748

Neighbor

gene id symbol gene type direction distance location
si:ch211-207i20.2 LOC108274000 coding upstream 92469 139859 ~ 151454 (+)
LOC113535195 LOC108273631 coding upstream 107135 134237 ~ 136788 (+)
LOC113535310 NA coding upstream 118084 121267 ~ 125839 (+)
LOC113536986 LOC108273772,LOC108273771 coding upstream 138003 83710 ~ 105920 (+)
LOC113536897 NA coding upstream 172766 14641 ~ 71157 (+)
LOC117598554 NA coding downstream 19633 274381 ~ 275446 (+)
btbd16 btbd16 coding downstream 466303 721051 ~ 753040 (+)
htra1b htra1,LOC107660481 coding downstream 539690 794438 ~ 823982 (+)
zgc:174164 NA coding downstream 581303 836051 ~ 856083 (+)
get4 get4,LOC104959995,LOC103374619 coding downstream 603320 858068 ~ 867809 (+)
G188466 NA non-coding upstream 61048 157512 ~ 182875 (+)
LOC113537089 NA non-coding upstream 235408 8047 ~ 8515 (+)
G188605 NA non-coding downstream 254282 509030 ~ 511976 (+)
G188681 NA non-coding downstream 379652 634400 ~ 634983 (+)
G188694 NA non-coding downstream 438211 692959 ~ 694469 (+)
G188715 NA non-coding downstream 485678 740426 ~ 741752 (+)
G188730 NA non-coding downstream 579355 834103 ~ 834569 (+)
ccser2b ccser2 other upstream 21504 137521 ~ 222419 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other downstream 470285 725033 ~ 784991 (+)
LOC113535146 LOC108261429 other downstream 702784 957532 ~ 974218 (+)
LOC117598477 NA other downstream 1312768 1567516 ~ 1665813 (+)
LOC117598558 NA other downstream 1682939 1937687 ~ 1952224 (+)
pyyb NA other downstream 2270308 2525056 ~ 2528820 (+)

Expression


Co-expression Network