LOC113547470


Basic Information

Item Value
gene id LOC113547470
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2641841 ~ 2644184 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404829.2
ttttgcAGGTTGTAACTACATGCACAGCTTCACAAATGCACTCTTGTGCCGTAGTGTTTGGTTCTCCAGTGGTGATGTCCATGTAAACTGTGGCATGATATAACCCTTCCTtacactgagATTTCCATGCTTTACTTCATCACCCTGTGAAAACAACTTTCTGGGATAAAAATGATTTGGCTGGAGGATTTGGATTAGGAATAATAGACCTGTGAACTGGATGACAGGAAAAGGAAAGGGGCACTGAGGGATACTCCACCATTCCATCCCTTAGCTCTGTCGCCTGGCTTTGTCTGTGCATGAGTTCATGGACGATGAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404829.2 True 321 lncRNA 0.44 3 2641841 2644184

Neighbor

gene id symbol gene type direction distance location
mpp2b mpp2,LOC108273574,LOC108410806 coding upstream 67067 2531080 ~ 2574774 (+)
tut1 tut1 coding upstream 126587 2503394 ~ 2515254 (+)
mki67 NA coding upstream 139011 2489809 ~ 2502830 (+)
raraa raraa,rara,LOC108273576,LOC108410801,LOC107660476,LOC107678286,LOC107716487,LOC107745620 coding upstream 155045 2394076 ~ 2486796 (+)
top2a top2a,LOC107598028,LOC107660475 coding upstream 280746 2347045 ~ 2361095 (+)
ngfrb LOC108273578 coding downstream 12676 2656860 ~ 2697247 (+)
LOC113547481 LOC108273850,LOC107735415 coding downstream 254705 2898889 ~ 2906026 (+)
LOC113547478 LOC108273849,LOC108443156 coding downstream 261970 2906154 ~ 2923348 (+)
LOC113547477 adprh,LOC108274007,LOC108411014,LOC108411010 coding downstream 432909 3077093 ~ 3082950 (+)
LOC113547472 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding downstream 449820 3094004 ~ 3099985 (+)
G189684 NA non-coding upstream 26086 2614697 ~ 2615755 (+)
G189626 NA non-coding upstream 32344 2591238 ~ 2609497 (+)
G189678 NA non-coding upstream 33763 2605883 ~ 2608078 (+)
G189570 med24,LOC107716488,LOC107706820,LOC107660474,LOC107678252,LOC107560528 non-coding upstream 323534 2317318 ~ 2318307 (+)
G189563 NA non-coding upstream 332423 2308226 ~ 2309418 (+)
G189916 NA non-coding downstream 229971 2874155 ~ 2875297 (+)
G189933 NA non-coding downstream 281030 2925214 ~ 2925571 (+)
G189934 LOC108273851 non-coding downstream 283617 2927801 ~ 2928169 (+)
G189940 NA non-coding downstream 286749 2930933 ~ 2931380 (+)
G189941 NA non-coding downstream 290171 2934355 ~ 2935400 (+)
pyyb NA other upstream 113021 2525056 ~ 2528820 (+)
LOC117598558 NA other upstream 689617 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 976028 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 1667623 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 1856850 725033 ~ 784991 (+)
G189864 NA other downstream 116509 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 325941 2970125 ~ 3021609 (+)
G190028 NA other downstream 594260 3238444 ~ 3239216 (+)
G190212 NA other downstream 757083 3401267 ~ 3405009 (+)
LOC113547484 LOC108273453 other downstream 786129 3430313 ~ 3453426 (+)

Expression


Co-expression Network