LOC113527241 (LOC108261801,LOC108273610)


Basic Information

Item Value
gene id LOC113527241
gene name LOC108261801,LOC108273610
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25134451 ~ 25135165 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579129.1
CTTGTTTCTTCGACAAGAAAAGAAACACCTTTCTTTCTGATATCTTCACCTTTAACTGGCTTCATCACATGGACACAGTAAAACTTACTGTGACTTCGTTTGGAGAGCAGTTTTCCTACCTGTTGAAAAACGTGAGTGAGGATGCAAGGAAGGCAGGAGTGACTGAGACACCATGTAACTATGGAGACAAGGGCATGCTGAAGTTAATGTTGAGTGAATTATTTGGAGAATCCCCCGTCTCTGTCAGAGAGGCCTACACGTCCCAGCCCCTGAAAGTTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579129.1 True 281 lncRNA 0.44 3 25134451 25135165

Neighbor

gene id symbol gene type direction distance location
LOC113527669 LOC108273607 coding upstream 54622 25063600 ~ 25079829 (+)
lrit2 lrit2 coding upstream 121160 25007848 ~ 25013291 (+)
lrit1b lrit1 coding upstream 131181 24998950 ~ 25003270 (+)
LOC113527566 ikzf5 coding upstream 269770 24861416 ~ 24864681 (+)
bub3 bub3 coding upstream 449297 24677184 ~ 24685154 (+)
LOC117598682 LOC108273610,LOC108273608,LOC108273529 coding downstream 11504 25146669 ~ 25153897 (+)
LOC113527238 LOC108273610,LOC108261801 coding downstream 19827 25154992 ~ 25162871 (+)
LOC113527655 LOC108274290 coding downstream 125575 25260740 ~ 25270653 (+)
LOC117598570 dusp13,LOC108273859,LOC107748394,LOC107595212 coding downstream 247700 25382865 ~ 25386388 (+)
LOC113524867 LOC108273861,LOC108415359,LOC107676426,LOC107597761,LOC107748324,LOC107718692,LOC104943471,LOC108416695 coding downstream 251670 25386835 ~ 25389881 (+)
G202286 NA non-coding upstream 22967 25110288 ~ 25111484 (+)
G202273 NA non-coding upstream 45738 25086915 ~ 25088713 (+)
G202218 NA non-coding upstream 72282 24973904 ~ 25062169 (+)
G202215 LOC108273604,LOC107756949,LOC107569511,LOC104927182,LOC103142276,LOC103481437 non-coding upstream 161211 24971620 ~ 24973240 (+)
G202182 NA non-coding upstream 197574 24936284 ~ 24936877 (+)
G202290 NA non-coding downstream 51617 25186782 ~ 25189327 (+)
G202310 LOC106943100,LOC106904307,LOC107373152 non-coding downstream 64545 25199710 ~ 25199947 (+)
G202342 NA non-coding downstream 155576 25290741 ~ 25290965 (+)
G202339 NA non-coding downstream 234165 25369330 ~ 25369655 (+)
G202354 NA non-coding downstream 268677 25403842 ~ 25409006 (+)
LOC113527710 hmx3 other upstream 467843 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 628375 24455659 ~ 24506076 (+)
G201962 NA other upstream 752164 24381787 ~ 24382287 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 1446034 23604837 ~ 23688417 (+)
G201214 NA other upstream 1804880 23324073 ~ 23329571 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 194044 25329209 ~ 25428112 (+)
G202397 LOC108273443 other downstream 362550 25497715 ~ 25498919 (+)
G202374 NA other downstream 363015 25498180 ~ 25502628 (+)
LOC117598538 NA other downstream 864486 25999651 ~ 26005825 (+)

Expression


Co-expression Network