LOC113527449


Basic Information

Item Value
gene id LOC113527449
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4248183 ~ 4257048 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579130.1
CCGGAAGAAAATTGCCTTTGGGTTCATGCTGCtaaatagaaggaaaaaaaaaccttcaaagtgattttttttttttaaataaagagtgGGAGTGAATGATTTTGGACTGAATTATTTGACAAGCAGTAACCAAATACTTGGGTTAAATATTGAACTCTGTGTTTAAATTCCAGCTTTCCAGAATTCAGGTCACACTAATAAGAGGTCCAGTAGCTTTACCGTTAAACATACACAGAAGGGGAAGTGACTAGGTGATCAGCTGTCCTGGTGTGCTGTGACAGCATTTCTGGTTTATGGTAATGAGCACTTCAGCATGCCCATACATCTATCATGTCAGCACAGGCGAGACGATCAGACATCACGGAGCCAGaagttcAGGAGGGACAAGAGAACAATGATTCAGAAGAGGAGGATGTATCTGAAGAAGAAGATAGGGAAGAACACAACCAGAGCATGAGGCATTATCTTCAGATGAAGAAGAAATCCCCCAAGCTGAAAAAGAGACATTTTGTCAAAGAACAGGAAAATGACATGGTCCTTGACACCATATGACAACCAGGGCAGGATGCCAGCACAAAATTTCATAAGGATGACCCCATGGCCCACAAGACATGCAGTTGCCCATGCCCAGGACATTGCTTAAACATTCTACATGTTCATCACACcagccataaaaaaaaaaaatcatcctggAGATGACAAATTTGGAGGGTTTCTGTAAAAATTGAGACAACTGGAAAAGGATGGATGAGATTGGTCTGCATGCCTACATAGGGCTGCTAATCTTAGCGGGTGTGCGTAGGTCCCAAGGTGAGGTTACGTCTAGTCTCTGGGATGCAGAGAGTGGAAGGGCGATTTTCTGTGCCATGATGCCACTGAAAgtctttcacactttcacaaGAATGCTACAATTTGATAATCATGAATCAAGATCTGCAAGAGAGACAAACTGGCAGCCATCAGAGAGGTCTGAGAGAAGTgggtggagcgtctgccatacctCTATAACCCTGGGCCTGAAGTAACatctgtaatGATGCTGTCCTTTCCGGCAGAGTATGCCCAGCAAGCCATCAACGTATGGCATCAGTATATGGGTGGCCTGTGACGCACAATCCTGTTACGCTTGGAAGATGCAAGTCTACACAAGGAAGCCTTCCAGTGGAGCCCCGGAGAAGAACCAGAGGATGTGGGTTGTGCTTGACGTGACAGATAGACTGAGGGGGCACAATGTCATGTGTGACAATTTCTTCACCAGTTATGAACTCAGCCAGCAGCTCCTGAAGAGGAAGATCACCATGTTTGGAAGAGTTAGGAAGAACAAGCCTGAGCTTCCCCTGCACTCCTTGCAACAAGGGGAAGAGAGGCCTTCTCATCATAGTTTGCCTTCAACCCTACCACCAGACTCTAGTTTCGTACTTGCCAAAGAGGAACAAGAATGTGGTCCTCCTGAGCACACTGTACAAAACGGCTGAGATCAGTGATCATGAGGCCAGGAAGCCAGCCGTCCTCATACAATGCCTTTGTGATATGGAACAAGATCAACCCTACCTGGATGCCTGATAAGCGGAACAAGAGGAGGGTGTTCCTGGAGCAGCTGGGAAAGCCACTTTAGTATCCCCATACATTCAAAGAAGGGAGCGCCTCCCTCGCACAGCAGCCTTTGCAGTGCTTGTGAAAGCTCTTCAGGGGGCTGAATCCTGTCCAGATCCATCTGAGGCTGCAGCTGAGGCTGGCAAGAGGAGGAGATGCCAATTCTGCCCCCAAAGAAAGACTGTGAAACAAATACTATGTGCTGCACATGTGAGAAATACATCTACAAagtccatgcacacacatttgcatactGTCCTACATTTACTAAATAGAGTTGATTGATTTATGTTCttcaagtttttgttttgtatctattatcttattttattcttatttattgttgttgtttatacaCTTTGTGGGTGGGggaaattgttaaaaaaatgggAAGAGACTAGTATTTTGTAGTTGAATTCCTTATTGTAcagaatataagaatatatcaCTATGTTGCCAGAACTGTGAAGAGCTGGGGTGTGCAATCTTTTccacaaagggccggtgtgggtgcaggttttcaatCCAATCAATCAGGAGccaaaacctgcacccacaccagccctttctgGAAGAGATTGGAGACCCCTTGTGAAGAGGGAAGACCCAGATATATACCCAGATAAAGTTTGTGATGAAGTTTGTGATGAATGACAGGTTTCTTCATGGAAAATAGATTTGGGGTTTAAAATTCAATTAAGCATTGAATTAAGCATTCAGTCAAGCTCTTGGCATTTGACTAACTATGTCATGAAGCTTGGTTGAGATGACGAGCAAAAACTCCCTTGATTACAGAAGGACAAGTTAACAGGAAAGAAGGGGCTCATCCCTGATTTAAACATAGGACCTCTAGCACTCAAAGCAAGACTCATACCCCTAGACCATTTGGTAATAGCCTACTAGCCTGGATTGGCTCAAgccacttttgtttttgttaatttccTTTTGCACAAATGTCCTAACATAGACACGACTCTGGGTATCCTAGAAAGGTCTACTCTCCTTCACAATTCGGTTCCAACCTTAGTCCATCACACTAGACATTTCAACGTATTTTTGCTTTTGTCTTCAGAGAGCAAAGTGACATCTGTGAGCActggtttaattaaaatgcagtgGTGACGTAGAGTGTTTGCAAGTTCTCATCACCGAAATTGGTACGCCAAGGTGCTAACCAAGAGGTAGACTAAACCTGAAAGGGCATTCCCTTGAAAAGAGTCTTCCCTGAAAATTCAattaagctgttttattttaggaGTTTAAGTGAAGGTGGGTCATTTTTGACCCTTAGGACAAGCGGAGTATACATAATGTTAAGACTACACAAGGGCTATATAAACACAATGACAATGTAGTGAAAAGGGATCACATCAGTTTTAGCCTTAGTCCAGTACCCTGTCCTGATCCAATGTAAGGTTcttctatttgtttttaaagctctttAAATGGGCTAGCCCCCTTCTACATTGTAGACCTTCTTTCTCTATACTTAGCTCTTAGGTCTCTGAGGTTTTCTGACCAGTTACTCCACGCTGTTCTACAGTCTCAGTTGAGGCTAAAGGGTGACCATGCTTTTGCAATCACTGTGCCAAGGCTGTAGAACAGACTACCCCATGATATCAGGAGTGCCTCATCGGTtaccattttaaaatcaaaactaaAGTCATatcttttcacatttattttacttttgttattgttattactattattgctATTTTATCTTTAgcagtattattttatttattgtgtccGGTCTGTATTTTCAGTTTTATCTCAGTTTTATTCTTATGTCTGTACGGCACTTTCGGCAACTATAGTTATTAGTATTGTTAGCATGTGTTATTCTGGTTTTAACTTTGTTTTGCTACCCCGATTTCTGGATTTTGcctattttatgtattttgatGATTGCCTGAATCTCTGCCTGTTTCTGACCTTGATTTTGCTCCACGTTTTGTATTGTTTGCCTGGTTTacctacagtcaggtccggaagtatttggacattgacagagtttttgtgattttgcctttatatatcacca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579130.1 True 3640 lncRNA 0.42 4 4248183 4257048

Neighbor

gene id symbol gene type direction distance location
LOC113527654 slc39a11 coding upstream 88982 4030900 ~ 4159201 (+)
dnajc9 dnajc9 coding upstream 348314 3894283 ~ 3899869 (+)
usp22 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding upstream 362443 3850678 ~ 3885740 (+)
cops3 cops3 coding upstream 398554 3834106 ~ 3849629 (+)
pemt pemt coding upstream 475554 3731785 ~ 3772629 (+)
trnae-cuc_25 NA coding downstream 176193 4433241 ~ 4433312 (+)
LOC113527300 NA coding downstream 286929 4543977 ~ 4547730 (+)
LOC113527299 NA coding downstream 306765 4563813 ~ 4567522 (+)
vstm4b vstm4,LOC108437315 coding downstream 313010 4570058 ~ 4586500 (+)
si:dkey-191m6.4 LOC108274024,LOC108437306 coding downstream 343252 4600300 ~ 4625347 (+)
LOC113527450 NA non-coding upstream 9805 4178011 ~ 4238378 (+)
LOC117598473 NA non-coding upstream 253982 3980680 ~ 3994201 (+)
LOC117598657 NA non-coding upstream 255773 3989433 ~ 3992410 (+)
G190462 NA non-coding upstream 276250 3971060 ~ 3971933 (+)
G190423 NA non-coding upstream 463085 3784232 ~ 3785098 (+)
G190748 NA non-coding downstream 39345 4296393 ~ 4297239 (+)
G190775 NA non-coding downstream 229475 4486523 ~ 4486756 (+)
G190795 NA non-coding downstream 339642 4596690 ~ 4596929 (+)
G190797 NA non-coding downstream 368571 4625619 ~ 4628876 (+)
G190964 LOC108274181 non-coding downstream 802469 5059517 ~ 5063419 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other upstream 317740 3903347 ~ 3930443 (+)
rasd1 rasd1,LOC107653935,LOC107720458,LOC108412952 other upstream 464574 3781161 ~ 3783609 (+)
lmf1 lmf1,LOC107580192 other upstream 524940 3697794 ~ 3723243 (+)
LOC113547484 LOC108273453 other upstream 794757 3430313 ~ 3453426 (+)
G190212 NA other upstream 843174 3401267 ~ 3405009 (+)
lrrc18b lrrc18 other downstream 336059 4593107 ~ 4596029 (+)
G190865 NA other downstream 498049 4755097 ~ 4839369 (+)
gngt2b NA other downstream 1046029 5303077 ~ 5304909 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other downstream 1072994 5330042 ~ 5340563 (+)
LOC113527671 LOC108441166,LOC108273636 other downstream 1473106 5730154 ~ 5740905 (+)

Expression


Co-expression Network