LOC117598464


Basic Information

Item Value
gene id LOC117598464
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24872954 ~ 24894054 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579132.1
gtgagtgtggactTCCCCACTGCAGGTAACccgcacagcacacacacacacacccctgcagAGCTTCGCGTGTTCATCAACACAACACCTTCATCAGGAATAAAGAGGAACAGAAATAAAGgccTCATTACTGAAAAACCGCGGACGCTGAGGAAGCAGAGCGAGTAAGAGCAGgtTGAGCTGCTCCTCATCTTGTTATCCTCGAGATTTAGCTGCTGGAAAATCCTTATCCtaggtcacagggagcctggagactatcccaggggactcggggcacaaggtgggggacatcCTGAACGGGGAACCAAGCCATCACAGGgcacgatcacacacacactcacacacaatttggaaacaccaatcagcctacaccgcatgtctttggactgggggagggaaaccctgaagcatggggagaacatgcaaactccacacacacagggtgggaatcaaacccccaaccctggaggtgtgaagCAAACATGCTAATCATAAGCCACTGTGTCACGCTGCTGGAAAAtcatctttttaattcatttattcttaaTAAATCTTTACCCAGTGATACAGagggtagcgttgctgcctcaacATGCTCCACGTTCCCAgtttcgatcctgagctcgggttaccgTCGGTGTGGAGTTTCGTACGTTCTCCCCGTGTCCGGGTGagcttcctccaggttctccggtttcctcccactttccagaaacatgccagtaggtggattgtgAAGACAAATTACCCCTATGcatgaataatgtgtgtgaaCTGCAGTgcaattttgcaatatttatgcTGAATTCATCCATACTGGAAACTCCTAAAAGCCAGACCTCCAACATGGACAACTGCAATGGTACGTTCATTCAAACTGCAATTCCAAGTCAGGAACTCGGCGAACATCCACCTATCCTGAGTTCTCGGACAAAAACACACCTGACGTCACAACAACATGGCGGCAAAGTGTCAGCGGTGCACAGAATTCCCGTTGCTTTAATTTTTACTTGATAAAACTTTACTTTACTCGATCTGTAGCTTTTGCTTTGTGAAACATGTTTAACAACTTTGTAAGTTTAGATCTGTAAAGTAGCTCCGCTGATCTCAGCTCAGTTGTGACAGACTGCTCGGATTTTATGACAGAGATGAACAAGGCAGTTGATCTATCGCGTACGTCGTTTCTCAGCGCTAATCGCACAGGAGTAATTCATGCACATCTTCTTAATGTGCTTATCAAATTCAGAGACTTGACATACAAACATCACCGTGCTctgagcagccatgtttttcCAAGCTGAAGCCTGGGGCGCTTTTAGACATGAACTGGAGAAACAATGGATCTCAGCATTAAACCCAAGGCAGCATGGGCTGAACcggatggagtgtgtgttcgttttgttaattatttttaattaaataagaacCCTAGCACACAAACACTGGGAGTCAGTGGCAAATAAAACCTCAGGTGTAGGAATGTGAGCAGTgccagcatggtgtgtgaattctggctctgacagttcctcaacctcagctacatcccTCCAGTTCATAATCACTCTTAACTAGAGATGTGTCCTGAACTGCTTTAATTTAATCCCACTCGCACATTAAACAAATTGAACTGCTTCTCAATATGATCAAAGCAGTAGTCTAATTCAAACCACCACTGGAAACATCTGGTTATTAAATTTCCTTTGctataaaacataaacagtTTTTTCAGCAACTCAGGAATCTTTTATGAAACCCAGGAACCTTACTGTTctagctcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgttttggacgTGTGTTTGGgacactgctgctgttttctaGTCCAGCTGTCACGGCTCACTTGCTGATGAAGTTAATGAtgagcgctctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcacgcttTCTACCCATCTGGCCCTGAAATGCACAGTAACAGCTGGATCTGAACACCAAAACAAACTAACTGTGTCTACTGGGACTGTGGAGTTAATCAACTACCGTCTcactatccatctctctctctctctctctctctctctctttctgtctgtcctctgtctttttttttctccgtctctgtctttttc

Function

GO:

id name namespace
GO:0098813 nuclear chromosome segregation biological_process
GO:0000819 sister chromatid segregation biological_process
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0048285 organelle fission biological_process
GO:0007059 chromosome segregation biological_process
GO:0030261 chromosome condensation biological_process
GO:0007076 mitotic chromosome condensation biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000280 nuclear division biological_process

KEGG:

id description
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579132.1 True 2199 lncRNA 0.46 3 24872954 24894054

Neighbor

gene id symbol gene type direction distance location
LOC113527566 ikzf5 coding upstream 8273 24861416 ~ 24864681 (+)
bub3 bub3 coding upstream 187800 24677184 ~ 24685154 (+)
LOC113527709 hmx2 coding upstream 198378 24669218 ~ 24674576 (+)
cpxm2 cpxm2,LOC106577304,LOC107569505 coding upstream 283121 24539290 ~ 24589833 (+)
oat oat,LOC107569518,LOC107684577 coding upstream 474507 24380301 ~ 24398447 (+)
lrit1b lrit1 coding downstream 104896 24998950 ~ 25003270 (+)
lrit2 lrit2 coding downstream 113794 25007848 ~ 25013291 (+)
LOC113527669 LOC108273607 coding downstream 169546 25063600 ~ 25079829 (+)
LOC117598682 LOC108273610,LOC108273608,LOC108273529 coding downstream 252615 25146669 ~ 25153897 (+)
LOC113527238 LOC108273610,LOC108261801 coding downstream 260938 25154992 ~ 25162871 (+)
G202173 NA non-coding upstream 19069 24852287 ~ 24853885 (+)
LOC117598647 NA non-coding upstream 54602 24816481 ~ 24818352 (+)
LOC113527734 NA non-coding upstream 81549 24789320 ~ 24791405 (+)
G202115 NA non-coding upstream 196796 24675682 ~ 24676158 (+)
G202007 NA non-coding upstream 390512 24480257 ~ 24482442 (+)
G202182 NA non-coding downstream 42230 24936284 ~ 24936877 (+)
G202215 LOC108273604,LOC107756949,LOC107569511,LOC104927182,LOC103142276,LOC103481437 non-coding downstream 77566 24971620 ~ 24973240 (+)
G202218 NA non-coding downstream 79850 24973904 ~ 25062169 (+)
G202273 NA non-coding downstream 192861 25086915 ~ 25088713 (+)
G202286 NA non-coding downstream 216234 25110288 ~ 25111484 (+)
LOC113527710 hmx3 other upstream 206346 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 366878 24455659 ~ 24506076 (+)
G201962 NA other upstream 490667 24381787 ~ 24382287 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 1184537 23604837 ~ 23688417 (+)
G201214 NA other upstream 1543383 23324073 ~ 23329571 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 435155 25329209 ~ 25428112 (+)
G202397 LOC108273443 other downstream 603661 25497715 ~ 25498919 (+)
G202374 NA other downstream 604126 25498180 ~ 25502628 (+)
LOC117598538 NA other downstream 1105597 25999651 ~ 26005825 (+)

Expression


Co-expression Network