LOC117598466


Basic Information

Item Value
gene id LOC117598466
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6259865 ~ 6261598 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579134.1
GCTGTTTTGCCAGTATTTGTTCAGCCATATGTTTTAATCTGATGAATTTAGCGCAGATTAACCACACTGTTGGAAATTATTGTTCTGTTTGTTTATGTGCATAAAATATCCAGTGTTTTAAACAGTCTCCAATTATGacactgaaTCCCATCTGTAAAGCAGCATCCTGTCTGTGTATCATTCTCAGGATCTCAGCAAGGAGGCTTCACAAGTGGGATATGATGTGAGGACATCTGTTATGCAACTGATACACACTGTGAAGGCTACAGGACTTACAAAAAACACCATGCAAATCTAAGTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579134.1 True 303 lncRNA 0.39 4 6259865 6261598

Neighbor

gene id symbol gene type direction distance location
LOC117598588 LOC108273543,LOC108262318 coding downstream 94931 6163064 ~ 6164934 (-)
LOC117598586 LOC108262318,LOC108273543 coding downstream 104983 6153790 ~ 6154882 (-)
LOC117598661 NA coding downstream 124745 6129107 ~ 6135120 (-)
LOC117598565 LOC108262318,LOC108273543 coding downstream 149738 6108981 ~ 6110127 (-)
LOC117598474 LOC108262318,LOC108273543 coding downstream 157339 6101081 ~ 6102526 (-)
rbp4 rbp4 coding upstream 7275 6268873 ~ 6270634 (-)
fra10ac1 fra10ac1,LOC108274300,LOC107654038,LOC107743956,LOC107664625,LOC107557362 coding upstream 23462 6285060 ~ 6299979 (-)
noc3l noc3l coding upstream 155878 6417476 ~ 6436006 (-)
tbc1d12b tbc1d12,LOC107708937,LOC107743959,LOC107664632,LOC107654040 coding upstream 176081 6437679 ~ 6460359 (-)
LOC113527434 tnks2,LOC108274191,LOC108431390,LOC107654041 coding upstream 203417 6465015 ~ 6504729 (-)
G191772 kif22 non-coding downstream 7683 6251422 ~ 6252182 (-)
G191763 NA non-coding downstream 39484 6219812 ~ 6220381 (-)
G191762 NA non-coding downstream 40471 6218706 ~ 6219394 (-)
LOC113527731 NA non-coding downstream 321652 5935539 ~ 5938213 (-)
G191490 NA non-coding downstream 519666 5739978 ~ 5740199 (-)
G191786 NA non-coding upstream 28813 6290411 ~ 6290912 (-)
G191788 NA non-coding upstream 31932 6293530 ~ 6295793 (-)
G191947 NA non-coding upstream 201890 6463488 ~ 6488739 (-)
G191949 NA non-coding upstream 216591 6478189 ~ 6478817 (-)
G191950 NA non-coding upstream 218169 6479767 ~ 6481169 (-)
LOC113527291 LOC108274042 other downstream 468595 5768528 ~ 5791270 (-)
G191430 NA other downstream 645911 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 768940 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 1196447 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 1307006 4949163 ~ 4952859 (-)
itga3b itga3 other upstream 285343 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1138402 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1319752 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1339620 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2586064 8847662 ~ 8857748 (-)

Expression


Co-expression Network