LOC117598488


Basic Information

Item Value
gene id LOC117598488
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3845785 ~ 3849920 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579147.1
CCTGCTATATATTAGTATTCTGATAGTTAACGTACCAGTCAactgcgcgcgcacacacacacacacagttagacaACAGAGTGAATGCTTTCCCTTCAGCCCTAGTACCATAATTCAGATATCATACCTAGAAGACGACACATGCAGCTTCTCCACACCCTGACTTATGAAACAGCTGATGAAGAAGACTGATGCATTAGACAGAAGGCTGGAAGCCGTTTTAtcccaggtggtggaggagaaggagaaccTGCTGTACATTAGCTGAAAGCTCAGGTGGTGGTGGTATGTGTCAGCAGGGGCATGGTCAAGCATCGGCTATGTACGGAGAGAAGAATGAGTCAGAAAGAGATGGAGCTGACAGAGGGAACACAAAACGCAACACGCTCAACTTAAACTAGAAGCTAGCCAGCTGTGAGCAGCttagcattttaattttggttTCATTATGTGTAGCATATGTGATTGGCAAGTGCTAAAAAGCTTGCTGGCGAAAgcaattgtaaataaaatatcgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579147.1 True 518 lncRNA 0.45 3 3845785 3849920

Neighbor

gene id symbol gene type direction distance location
LOC113539277 nt5m,LOC107719901 coding downstream 14971 3815947 ~ 3830814 (-)
med9 med9 coding downstream 60655 3784309 ~ 3785130 (-)
LOC113539064 NA coding downstream 194761 3648368 ~ 3651024 (-)
neurod2 neurod2 coding downstream 449427 3392544 ~ 3396358 (-)
med1 med1 coding downstream 493236 3330026 ~ 3352549 (-)
arg1 arg1,LOC108273904 coding upstream 80520 3930440 ~ 3935138 (-)
heatr1 heatr1,LOC107560530,LOC107675669,LOC102797743 coding upstream 88362 3938282 ~ 3971885 (-)
sstr2a sstr2a,LOC108274330,LOC108437322,LOC103031004,LOC107726267,LOC107719927,LOC107653975,LOC107693649 coding upstream 150529 4000449 ~ 4004877 (-)
LOC113527563 LOC108273452,LOC108437319 coding upstream 163927 4013847 ~ 4016313 (-)
sox9a sox9 coding upstream 442031 4291951 ~ 4295240 (-)
G190419 NA non-coding downstream 68813 3776733 ~ 3776972 (-)
G190354 NA non-coding downstream 148364 3693964 ~ 3697421 (-)
G190351 NA non-coding downstream 158277 3687306 ~ 3687508 (-)
LOC117598641 NA non-coding downstream 190175 3651026 ~ 3655610 (-)
G190336 NA non-coding downstream 213363 3615420 ~ 3632422 (-)
G190490 NA non-coding upstream 70271 3920191 ~ 3925230 (-)
G190563 NA non-coding upstream 186731 4036651 ~ 4037340 (-)
G190656 NA non-coding upstream 309856 4159776 ~ 4161007 (-)
G190731 NA non-coding upstream 404573 4254493 ~ 4258754 (-)
G190742 NA non-coding upstream 438497 4288417 ~ 4288803 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 990292 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 1018033 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 1034394 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 1236012 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 1634806 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 1061814 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 1099243 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 1209578 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 1634771 5484691 ~ 5490925 (-)
G191430 NA other upstream 1761200 5611120 ~ 5613954 (-)

Expression


Co-expression Network