LOC117598641


Basic Information

Item Value
gene id LOC117598641
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3651026 ~ 3655610 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579273.1
CCATTTTGGATGAGTGAAACTCGTGGACAAAGTCAAGATTTTTGTAAAAAGCTATTTCAGTGGTTTGTTAAGGAAGAATTAACAAgaatacattttgtttgtgaCATCTGACTTGGATAGAGAGACTCCGACAATGTCTGGACCTGCAAAGTTACGTGTGATTATCGATGAGCATGATATTCGCAAACTCAACCTTCCTTCTGGGATTCCGCATACAATTAAAGAACTGGAGATGGTGGTCAGAGAGACATTTCAGTTAACTGGAAATTTTGCTCTGCATTATAAAGATGCAGAGTTTGGGGATTTCTTCTCTTTGACTACACCAACAGATCTTAATGACAAAGACATCATTAAAGTGGTTTATGTCGAACCTGCGTTTGTGACTCTAACTACAGTTGAGAGCATTTCACCACCATCAGATGCCTCGTCAGTTGCCTCGTCAGATGCCTTGTCAGTTGTATCGTCAGTTGCCTCGTCAGATGCCTCATCAGCTGTCTCGTCAGTTTCGTTCAGATCATCAGATGACACCGTGTTGCTTTCCCCTCCAAAAAGTCCTGGTCTGCGATCACAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579273.1 True 573 lncRNA 0.42 3 3651026 3655610

Neighbor

gene id symbol gene type direction distance location
LOC113539064 NA coding downstream 2 3648368 ~ 3651024 (-)
neurod2 neurod2 coding downstream 254668 3392544 ~ 3396358 (-)
med1 med1 coding downstream 298477 3330026 ~ 3352549 (-)
LOC113547465 LOC108274351 coding downstream 329404 3278909 ~ 3321622 (-)
LOC113547469 elob,tceb2,LOC102782282,LOC103367351,LOC100692966,LOC103036770,LOC108427344,LOC102795145 coding downstream 408383 3238419 ~ 3242643 (-)
med9 med9 coding upstream 128699 3784309 ~ 3785130 (-)
LOC113539277 nt5m,LOC107719901 coding upstream 160337 3815947 ~ 3830814 (-)
arg1 arg1,LOC108273904 coding upstream 274830 3930440 ~ 3935138 (-)
heatr1 heatr1,LOC107560530,LOC107675669,LOC102797743 coding upstream 282672 3938282 ~ 3971885 (-)
sstr2a sstr2a,LOC108274330,LOC108437322,LOC103031004,LOC107726267,LOC107719927,LOC107653975,LOC107693649 coding upstream 344839 4000449 ~ 4004877 (-)
G190336 NA non-coding downstream 18604 3615420 ~ 3632422 (-)
LOC117598465 NA non-coding downstream 114604 3535665 ~ 3536422 (-)
G190304 NA non-coding downstream 153627 3497129 ~ 3497399 (-)
G190232 NA non-coding downstream 223382 3427436 ~ 3427644 (-)
G190188 NA non-coding downstream 301297 3349374 ~ 3349729 (-)
G190351 NA non-coding upstream 31696 3687306 ~ 3687508 (-)
G190354 NA non-coding upstream 38354 3693964 ~ 3697421 (-)
G190419 NA non-coding upstream 121123 3776733 ~ 3776972 (-)
LOC117598488 NA non-coding upstream 190175 3845785 ~ 3849920 (-)
G190490 NA non-coding upstream 264581 3920191 ~ 3925230 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 795533 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 823274 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 839635 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 1041253 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 1440047 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 1256124 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 1293553 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 1403888 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 1829081 5484691 ~ 5490925 (-)
G191430 NA other upstream 1955510 5611120 ~ 5613954 (-)

Expression


Co-expression Network