Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598703 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 8259214 ~ 8261423 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006904 | vesicle docking involved in exocytosis | biological_process |
| GO:0000145 | exocyst | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_004579326.1 | True | 1285 | lncRNA | 0.47 | 2 | 8259214 | 8261423 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| reep3b | reep3,LOC108412837 | coding | upstream | 82015 | 8149279 ~ 8177199 (+) |
| nrbf2b | nrbf2 | coding | upstream | 240000 | 8011864 ~ 8019214 (+) |
| adoa | ado | coding | upstream | 282046 | 7974219 ~ 7977168 (+) |
| arid5b | arid5b,LOC107727057 | coding | upstream | 320600 | 7852411 ~ 7938614 (+) |
| cabcoco1 | c13h10orf107 | coding | upstream | 420788 | 7812450 ~ 7838426 (+) |
| tubgcp2 | tubgcp2,gcp2,LOC106589265 | coding | downstream | 50698 | 8312121 ~ 8324525 (+) |
| myof | myof | coding | downstream | 64729 | 8326152 ~ 8358172 (+) |
| zgc:152977 | sun1 | coding | downstream | 98000 | 8359423 ~ 8393594 (+) |
| LOC117595680 | rac1,RAC1,LOC108273830,LOC108437155,LOC105898786,LOC108412270 | coding | downstream | 134410 | 8395833 ~ 8401469 (+) |
| LOC113527453 | LOC101159016,LOC101485652,LOC100697553,LOC103373537,LOC107376513,LOC108239271 | coding | downstream | 146706 | 8408129 ~ 8413358 (+) |
| G192644 | NA | non-coding | upstream | 118154 | 8126773 ~ 8141060 (+) |
| G192650 | NA | non-coding | upstream | 187622 | 8069143 ~ 8071592 (+) |
| G192591 | NA | non-coding | upstream | 319630 | 7939041 ~ 7939584 (+) |
| G192422 | NA | non-coding | upstream | 784210 | 7474437 ~ 7475004 (+) |
| G192394 | NA | non-coding | upstream | 859586 | 7399343 ~ 7399628 (+) |
| G192716 | NA | non-coding | downstream | 7725 | 8269148 ~ 8270226 (+) |
| G192737 | NA | non-coding | downstream | 49455 | 8310878 ~ 8388117 (+) |
| G192760 | NA | non-coding | downstream | 252959 | 8514382 ~ 8515934 (+) |
| LOC117598667 | NA | non-coding | downstream | 335231 | 8596654 ~ 8601770 (+) |
| G192858 | NA | non-coding | downstream | 656617 | 8918040 ~ 8918245 (+) |
| G192484 | ank3 | other | upstream | 631103 | 7605981 ~ 7628111 (+) |
| tfam | tfam | other | upstream | 822842 | 7428545 ~ 7436372 (+) |
| asah2 | asah2,LOC107598643 | other | upstream | 1422831 | 6822740 ~ 6836383 (+) |
| LOC113527389 | NA | other | upstream | 1530823 | 6725321 ~ 6728391 (+) |
| G191581 | NA | other | upstream | 2275977 | 5969743 ~ 5983237 (+) |
| LOC113527534 | dnah9 | other | downstream | 1007070 | 9268493 ~ 9357961 (+) |
| G193383 | LOC108273473 | other | downstream | 1106820 | 9368243 ~ 9369915 (+) |
| trnaq-cug_13 | NA | other | downstream | 1250746 | 9512169 ~ 9512401 (+) |
| trnaq-cug_14 | NA | other | downstream | 1251137 | 9512560 ~ 9512631 (+) |
| mrpl58 | mrpl58 | other | downstream | 1251361 | 9512784 ~ 9515616 (+) |
