trnal-aag_8


Basic Information

Item Value
gene id trnal-aag_8
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10064545 ~ 10064626 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnal-aag_8
GGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGGGgcgtgggttcgaatcccaccgcTGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-aag_8 True 82 tRNA 0.65 1 10064545 10064626

Neighbor

gene id symbol gene type direction distance location
slc16a12b slc16a12,slc16a12b,LOC108413683,LOC107753457,LOC107669179,LOC107584144,LOC107758438 coding upstream 2306 10053473 ~ 10062239 (+)
pank1b pank1,pank1b,LOC108413682,LOC107753437,LOC107683711,LOC107758439,LOC107669213 coding upstream 11351 10043909 ~ 10053194 (+)
LOC117598566 kif20b,LOC108410719 coding upstream 36424 10025230 ~ 10028121 (+)
kif20bb kif20b coding upstream 38969 10014547 ~ 10025576 (+)
ankrd1b ankrd1 coding upstream 55422 9995500 ~ 10009123 (+)
ch25h ch25h,LOC107753436,LOC107683723 coding downstream 12391 10077017 ~ 10078115 (+)
acta2 acta2,LOC107683715,LOC106531354,LOC103382302 coding downstream 32743 10097369 ~ 10101788 (+)
ankrd22 ankrd22 coding downstream 54262 10118888 ~ 10124842 (+)
rnls rnls coding downstream 71290 10135916 ~ 10166915 (+)
atad1b atad1,atad1b,LOC107669218 coding downstream 137363 10201989 ~ 10214955 (+)
G193646 LOC108273498,LOC107727700 non-coding upstream 237681 9825427 ~ 9826864 (+)
G193645 NA non-coding upstream 240077 9824047 ~ 9824468 (+)
G193544 NA non-coding upstream 283590 9694909 ~ 9780955 (+)
G193542 NA non-coding upstream 411285 9652172 ~ 9653260 (+)
G193509 NA non-coding upstream 476726 9587165 ~ 9587819 (+)
LOC117598497 NA non-coding downstream 79727 10144353 ~ 10148786 (+)
G193842 minpp1 non-coding downstream 160076 10224702 ~ 10226319 (+)
G193828 pvalb2,prv2,LOC108432016,LOC107669167,LOC107753417 non-coding downstream 260330 10324956 ~ 10336247 (+)
G193972 NA non-coding downstream 285573 10350199 ~ 10350620 (+)
G194091 zdhhc4,LOC108274079 non-coding downstream 529603 10594229 ~ 10662463 (+)
arhgap23b LOC108273815 other upstream 372950 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 548929 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 550710 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 551914 9512560 ~ 9512631 (+)
trnaq-cug_13 NA other upstream 552144 9512169 ~ 9512401 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other downstream 580200 10644826 ~ 10646547 (+)
si:ch73-139e5.4 LOC108273417 other downstream 1168964 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 1221571 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 1549273 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 1998182 12062808 ~ 12085359 (+)

Expression


Co-expression Network