trnal-uag_4


Basic Information

Item Value
gene id trnal-uag_4
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9077118 ~ 9077199 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnal-uag_4
GGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGATTTAGGCTCCAGTCTCTTCGGAGgcgtgggttcgaatcccaccgcTGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-uag_4 True 82 tRNA 0.63 1 9077118 9077199

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc_6 NA coding downstream 258 9076789 ~ 9076860 (-)
rcvrnb rcvrn,rcvrnb,LOC107720397 coding downstream 49812 9026025 ~ 9027306 (-)
LOC113527765 LOC108273499,LOC107653939,LOC107742606,LOC107556458,LOC108424863,LOC104927391 coding downstream 120793 8940912 ~ 8956325 (-)
mprip mprip,LOC108273748 coding downstream 179057 8859204 ~ 8898061 (-)
abcc3 abcc3,LOC106589510,LOC107653990,LOC107742588 coding downstream 331012 8693259 ~ 8746106 (-)
trnaf-aaa NA coding upstream 367 9077566 ~ 9077647 (-)
trnaa-cgc_2 NA coding upstream 1787 9078986 ~ 9079057 (-)
trnaa-cgc_3 NA coding upstream 3811 9081010 ~ 9081081 (-)
trnal-uag_5 NA coding upstream 3977 9081176 ~ 9081257 (-)
trnal-uag_6 NA coding upstream 4726 9081925 ~ 9082006 (-)
G193138 LOC108273751 non-coding downstream 148470 8927981 ~ 8928648 (-)
G192945 NA non-coding downstream 535837 8464309 ~ 8541281 (-)
G192953 eef2k non-coding downstream 563648 8480420 ~ 8513470 (-)
G192954 NA non-coding downstream 591940 8483608 ~ 8485178 (-)
G192948 NA non-coding downstream 621815 8452197 ~ 8455303 (-)
G193315 NA non-coding upstream 77243 9154442 ~ 9156287 (-)
G193319 NA non-coding upstream 80992 9158191 ~ 9158569 (-)
G193316 NA non-coding upstream 82235 9159434 ~ 9184089 (-)
G193334 NA non-coding upstream 124793 9201992 ~ 9202672 (-)
G193355 dnah9 non-coding upstream 195218 9272417 ~ 9272654 (-)
si:dkey-94l16.4 LOC108273749 other downstream 219370 8847662 ~ 8857748 (-)
ank3b ank3,LOC107746453,LOC107654059 other downstream 1309606 7601218 ~ 7767512 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other downstream 1481237 7581350 ~ 7595881 (-)
ipmkb ipmk other downstream 1658740 7400000 ~ 7418378 (-)
itga3b itga3 other downstream 2482728 6546941 ~ 6594390 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 291018 9368217 ~ 9419487 (-)
trnam-cau_28 NA other upstream 438615 9515814 ~ 9515885 (-)
trnar-ucg_9 NA other upstream 438873 9516072 ~ 9516144 (-)
LOC113527759 LOC108273488 other upstream 509967 9587166 ~ 9590116 (-)
trnal-aag_7 NA other upstream 513176 9590375 ~ 9590456 (-)

Expression


Co-expression Network