trnam-cau_28


Basic Information

Item Value
gene id trnam-cau_28
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9515814 ~ 9515885 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnam-cau_28
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCGAAACCATCCTCTGcta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnam-cau_28 True 72 tRNA 0.60 1 9515814 9515885

Neighbor

gene id symbol gene type direction distance location
wdr45b wdr45b,LOC107598578 coding downstream 6521 9500260 ~ 9509293 (-)
foxk2 foxk2,LOC107719587 coding downstream 16634 9481550 ~ 9499180 (-)
myocd myocd coding downstream 264699 9162224 ~ 9251115 (-)
LOC113527142 gas7,LOC107653998,LOC107719691 coding downstream 383488 9093141 ~ 9132326 (-)
trnal-aag_5 NA coding downstream 432004 9083729 ~ 9083810 (-)
si:ch1073-357b18.4 LOC108273401 coding upstream 1324 9517209 ~ 9520812 (-)
LOC113527284 LOC108424836 coding upstream 78901 9594786 ~ 9596403 (-)
trnac-gca_15 NA coding upstream 112531 9628416 ~ 9628487 (-)
LOC113527303 LOC108274029,LOC108424886 coding upstream 127155 9643040 ~ 9653007 (-)
hexim1 LOC108273817 coding upstream 175895 9691780 ~ 9695274 (-)
G193453 NA non-coding downstream 5875 9509733 ~ 9509939 (-)
G193447 NA non-coding downstream 39830 9475084 ~ 9475984 (-)
G193433 NA non-coding downstream 107141 9408413 ~ 9408673 (-)
G193432 NA non-coding downstream 107469 9408082 ~ 9408345 (-)
G193431 NA non-coding downstream 107939 9407674 ~ 9407875 (-)
G193474 NA non-coding upstream 17844 9533729 ~ 9534024 (-)
G193476 NA non-coding upstream 19574 9535459 ~ 9536612 (-)
G193567 NA non-coding upstream 114797 9630682 ~ 9668932 (-)
G193731 NA non-coding upstream 308187 9824072 ~ 9825207 (-)
LOC117598498 NA non-coding upstream 628202 10144087 ~ 10169389 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other downstream 96327 9368217 ~ 9419487 (-)
si:dkey-94l16.4 LOC108273749 other downstream 658066 8847662 ~ 8857748 (-)
ank3b ank3,LOC107746453,LOC107654059 other downstream 1748302 7601218 ~ 7767512 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other downstream 1919933 7581350 ~ 7595881 (-)
ipmkb ipmk other downstream 2097436 7400000 ~ 7418378 (-)
trnar-ucg_9 NA other upstream 187 9516072 ~ 9516144 (-)
LOC113527759 LOC108273488 other upstream 71281 9587166 ~ 9590116 (-)
trnal-aag_7 NA other upstream 74490 9590375 ~ 9590456 (-)
LOC113527760 LOC108273447,LOC108424882,LOC103023950,LOC100693129,LOC101473140,LOC103373902 other upstream 74676 9590561 ~ 9592549 (-)
pcgf5b pcgf5,LOC108410714,LOC107584148,LOC107753439,LOC107669177,LOC107594155 other upstream 453857 9969742 ~ 9990264 (-)

Expression


Co-expression Network