trnap-agg_3


Basic Information

Item Value
gene id trnap-agg_3
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4908368 ~ 4908439 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnap-agg_3
GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-agg_3 True 72 tRNA 0.61 1 4908368 4908439

Neighbor

gene id symbol gene type direction distance location
trnap-ugg_8 NA coding downstream 1116 4907183 ~ 4907252 (-)
trnap-ugg_7 NA coding downstream 2303 4905995 ~ 4906065 (-)
trnap-ugg_6 NA coding downstream 3490 4904808 ~ 4904878 (-)
trnap-ugg_5 NA coding downstream 4677 4903621 ~ 4903691 (-)
trnap-ugg_4 NA coding downstream 5969 4902328 ~ 4902399 (-)
trnap-ugg_9 NA coding upstream 1120 4909559 ~ 4909630 (-)
trnap-ugg_10 NA coding upstream 3499 4911938 ~ 4912008 (-)
trnap-ugg_11 NA coding upstream 4687 4913126 ~ 4913197 (-)
trnap-ugg_12 NA coding upstream 5877 4914316 ~ 4914386 (-)
trnap-ugg_13 NA coding upstream 7066 4915505 ~ 4915576 (-)
G190885 NA non-coding downstream 157491 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 241797 4666312 ~ 4666571 (-)
G190829 NA non-coding downstream 311545 4596539 ~ 4596823 (-)
G190821 NA non-coding downstream 332838 4573682 ~ 4575530 (-)
G190742 NA non-coding downstream 619565 4288417 ~ 4288803 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding upstream 474556 5382995 ~ 5387137 (-)
G191413 NA non-coding upstream 534523 5442962 ~ 5445167 (-)
G191424 NA non-coding upstream 574181 5482620 ~ 5484667 (-)
G191463 NA non-coding upstream 757734 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 759445 5667884 ~ 5669753 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2052875 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 2080616 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 2096977 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 2298595 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 2697389 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 3295 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 40724 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 151059 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 576252 5484691 ~ 5490925 (-)
G191430 NA other upstream 702681 5611120 ~ 5613954 (-)

Expression


Co-expression Network