trnap-agg_4


Basic Information

Item Value
gene id trnap-agg_4
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4917816 ~ 4917887 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnap-agg_4
GGCTCGTTGGTCTAGGAGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-agg_4 True 72 tRNA 0.60 1 4917816 4917887

Neighbor

gene id symbol gene type direction distance location
trnap-ugg_13 NA coding downstream 2240 4915505 ~ 4915576 (-)
trnap-ugg_12 NA coding downstream 3430 4914316 ~ 4914386 (-)
trnap-ugg_11 NA coding downstream 4619 4913126 ~ 4913197 (-)
trnap-ugg_10 NA coding downstream 5808 4911938 ~ 4912008 (-)
trnap-ugg_9 NA coding downstream 8186 4909559 ~ 4909630 (-)
pagr1 pagr1 coding upstream 74055 4991942 ~ 4998332 (-)
g6pc3 g6pc3 coding upstream 338377 5256264 ~ 5265357 (-)
tmem101 tmem101 coding upstream 371825 5289712 ~ 5294398 (-)
trnai-uau_5 NA coding upstream 384226 5302113 ~ 5302205 (-)
LOC113527073 LOC108274342,LOC108274341 coding upstream 394357 5312244 ~ 5322475 (-)
G190885 NA non-coding downstream 166939 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 251245 4666312 ~ 4666571 (-)
G190829 NA non-coding downstream 320993 4596539 ~ 4596823 (-)
G190821 NA non-coding downstream 342286 4573682 ~ 4575530 (-)
G190742 NA non-coding downstream 629013 4288417 ~ 4288803 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding upstream 465108 5382995 ~ 5387137 (-)
G191413 NA non-coding upstream 525075 5442962 ~ 5445167 (-)
G191424 NA non-coding upstream 564733 5482620 ~ 5484667 (-)
G191463 NA non-coding upstream 748286 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 749997 5667884 ~ 5669753 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2062323 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 2090064 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 2106425 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 2308043 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 2706837 2194344 ~ 2210979 (-)
G191056 taok2,LOC108273910 other upstream 31276 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 141611 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 566804 5484691 ~ 5490925 (-)
G191430 NA other upstream 693233 5611120 ~ 5613954 (-)
LOC113527291 LOC108274042 other upstream 850641 5768528 ~ 5791270 (-)

Expression


Co-expression Network