trnap-agg_8


Basic Information

Item Value
gene id trnap-agg_8
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6787531 ~ 6787602 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnap-agg_8
GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-agg_8 True 72 tRNA 0.61 1 6787531 6787602

Neighbor

gene id symbol gene type direction distance location
trnap-cgg_6 NA coding upstream 1108 6786352 ~ 6786423 (+)
trnap-ugg_19 NA coding upstream 2265 6785195 ~ 6785266 (+)
trnap-agg_7 NA coding upstream 3446 6784014 ~ 6784085 (+)
trnap-agg_6 NA coding upstream 4600 6782860 ~ 6782931 (+)
trnal-uag_2 NA coding upstream 5754 6781706 ~ 6781777 (+)
trnap-ugg_20 NA coding downstream 1093 6788695 ~ 6788766 (+)
trnap-cgg_7 NA coding downstream 2272 6789874 ~ 6789945 (+)
sgms1 sgms1 coding downstream 8405 6796007 ~ 6815445 (+)
prkg1b prkg1,prkg1b,LOC107654050,LOC107695529,LOC106589397 coding downstream 74469 6862071 ~ 7015737 (+)
dkk1b dkk1 coding downstream 234321 7021923 ~ 7023638 (+)
G192043 NA non-coding upstream 1935 6778164 ~ 6785596 (+)
G192029 NA non-coding upstream 90561 6696732 ~ 6696970 (+)
G191868 NA non-coding upstream 314065 6463389 ~ 6473466 (+)
G191866 NA non-coding upstream 326517 6460811 ~ 6461014 (+)
G191719 NA non-coding upstream 516646 6268524 ~ 6270885 (+)
G192394 NA non-coding downstream 611741 7399343 ~ 7399628 (+)
G192422 NA non-coding downstream 686835 7474437 ~ 7475004 (+)
G192591 NA non-coding downstream 1151439 7939041 ~ 7939584 (+)
G192650 NA non-coding downstream 1281541 8069143 ~ 8071592 (+)
G192644 NA non-coding downstream 1339171 8126773 ~ 8141060 (+)
LOC113527389 NA other upstream 59140 6725321 ~ 6728391 (+)
G191581 NA other upstream 804294 5969743 ~ 5983237 (+)
LOC113527671 LOC108441166,LOC108273636 other upstream 1046626 5730154 ~ 5740905 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other upstream 1446968 5330042 ~ 5340563 (+)
gngt2b NA other upstream 1482622 5303077 ~ 5304909 (+)
asah2 asah2,LOC107598643 other downstream 35138 6822740 ~ 6836383 (+)
tfam tfam other downstream 640943 7428545 ~ 7436372 (+)
G192484 ank3 other downstream 818379 7605981 ~ 7628111 (+)
LOC113527534 dnah9 other downstream 2480891 9268493 ~ 9357961 (+)
G193383 LOC108273473 other downstream 2580641 9368243 ~ 9369915 (+)

Expression


Co-expression Network