trnap-cgg_2


Basic Information

Item Value
gene id trnap-cgg_2
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4898774 ~ 4898845 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnap-cgg_2
GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-cgg_2 True 72 tRNA 0.63 1 4898774 4898845

Neighbor

gene id symbol gene type direction distance location
fam20a fam20a coding downstream 49096 4837911 ~ 4849678 (-)
zdhhc16b LOC108273908,LOC108444288 coding downstream 71422 4810652 ~ 4827352 (-)
ubtd1b ubtd1,ubtd1b,LOC108437310 coding downstream 111198 4770544 ~ 4787576 (-)
mapk8b mapk8b,LOC108274025,LOC108437314,LOC107388204,LOC108263675,LOC103040580 coding downstream 250098 4625598 ~ 4648676 (-)
LOC113527719 LOC108273413 coding downstream 340640 4550108 ~ 4558134 (-)
trnap-agg_2 NA coding upstream 1121 4899966 ~ 4900037 (-)
trnap-ugg_3 NA coding upstream 2291 4901136 ~ 4901207 (-)
trnap-ugg_4 NA coding upstream 3483 4902328 ~ 4902399 (-)
trnap-ugg_5 NA coding upstream 4776 4903621 ~ 4903691 (-)
trnap-ugg_6 NA coding upstream 5963 4904808 ~ 4904878 (-)
G190885 NA non-coding downstream 147897 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 232203 4666312 ~ 4666571 (-)
G190829 NA non-coding downstream 301951 4596539 ~ 4596823 (-)
G190821 NA non-coding downstream 323244 4573682 ~ 4575530 (-)
G190742 NA non-coding downstream 609971 4288417 ~ 4288803 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding upstream 484150 5382995 ~ 5387137 (-)
G191413 NA non-coding upstream 544117 5442962 ~ 5445167 (-)
G191424 NA non-coding upstream 583775 5482620 ~ 5484667 (-)
G191463 NA non-coding upstream 767328 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 769039 5667884 ~ 5669753 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2043281 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 2071022 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 2087383 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 2289001 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 2687795 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 12889 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 50318 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 160653 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 585846 5484691 ~ 5490925 (-)
G191430 NA other upstream 712275 5611120 ~ 5613954 (-)

Expression


Co-expression Network