trnap-ugg_11


Basic Information

Item Value
gene id trnap-ugg_11
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4913126 ~ 4913197 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnap-ugg_11
GGCTCGTTGGTCTAGGGGTCTGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-ugg_11 True 72 tRNA 0.63 1 4913126 4913197

Neighbor

gene id symbol gene type direction distance location
trnap-ugg_10 NA coding downstream 1118 4911938 ~ 4912008 (-)
trnap-ugg_9 NA coding downstream 3496 4909559 ~ 4909630 (-)
trnap-agg_3 NA coding downstream 4687 4908368 ~ 4908439 (-)
trnap-ugg_8 NA coding downstream 5874 4907183 ~ 4907252 (-)
trnap-ugg_7 NA coding downstream 7061 4905995 ~ 4906065 (-)
trnap-ugg_12 NA coding upstream 1119 4914316 ~ 4914386 (-)
trnap-ugg_13 NA coding upstream 2308 4915505 ~ 4915576 (-)
trnap-agg_4 NA coding upstream 4619 4917816 ~ 4917887 (-)
pagr1 pagr1 coding upstream 78745 4991942 ~ 4998332 (-)
g6pc3 g6pc3 coding upstream 343067 5256264 ~ 5265357 (-)
G190885 NA non-coding downstream 162249 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 246555 4666312 ~ 4666571 (-)
G190829 NA non-coding downstream 316303 4596539 ~ 4596823 (-)
G190821 NA non-coding downstream 337596 4573682 ~ 4575530 (-)
G190742 NA non-coding downstream 624323 4288417 ~ 4288803 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding upstream 469798 5382995 ~ 5387137 (-)
G191413 NA non-coding upstream 529765 5442962 ~ 5445167 (-)
G191424 NA non-coding upstream 569423 5482620 ~ 5484667 (-)
G191463 NA non-coding upstream 752976 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 754687 5667884 ~ 5669753 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2057633 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 2085374 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 2101735 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 2303353 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 2702147 2194344 ~ 2210979 (-)
G191056 taok2,LOC108273910 other upstream 35966 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 146301 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 571494 5484691 ~ 5490925 (-)
G191430 NA other upstream 697923 5611120 ~ 5613954 (-)
LOC113527291 LOC108274042 other upstream 855331 5768528 ~ 5791270 (-)

Expression


Co-expression Network