trnap-ugg_12


Basic Information

Item Value
gene id trnap-ugg_12
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4914316 ~ 4914386 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnap-ugg_12
GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-ugg_12 True 71 tRNA 0.61 1 4914316 4914386

Neighbor

gene id symbol gene type direction distance location
trnap-ugg_11 NA coding downstream 1119 4913126 ~ 4913197 (-)
trnap-ugg_10 NA coding downstream 2308 4911938 ~ 4912008 (-)
trnap-ugg_9 NA coding downstream 4686 4909559 ~ 4909630 (-)
trnap-agg_3 NA coding downstream 5877 4908368 ~ 4908439 (-)
trnap-ugg_8 NA coding downstream 7064 4907183 ~ 4907252 (-)
trnap-ugg_13 NA coding upstream 1119 4915505 ~ 4915576 (-)
trnap-agg_4 NA coding upstream 3430 4917816 ~ 4917887 (-)
pagr1 pagr1 coding upstream 77556 4991942 ~ 4998332 (-)
g6pc3 g6pc3 coding upstream 341878 5256264 ~ 5265357 (-)
tmem101 tmem101 coding upstream 375326 5289712 ~ 5294398 (-)
G190885 NA non-coding downstream 163439 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 247745 4666312 ~ 4666571 (-)
G190829 NA non-coding downstream 317493 4596539 ~ 4596823 (-)
G190821 NA non-coding downstream 338786 4573682 ~ 4575530 (-)
G190742 NA non-coding downstream 625513 4288417 ~ 4288803 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding upstream 468609 5382995 ~ 5387137 (-)
G191413 NA non-coding upstream 528576 5442962 ~ 5445167 (-)
G191424 NA non-coding upstream 568234 5482620 ~ 5484667 (-)
G191463 NA non-coding upstream 751787 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 753498 5667884 ~ 5669753 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2058823 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 2086564 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 2102925 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 2304543 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 2703337 2194344 ~ 2210979 (-)
G191056 taok2,LOC108273910 other upstream 34777 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 145112 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 570305 5484691 ~ 5490925 (-)
G191430 NA other upstream 696734 5611120 ~ 5613954 (-)
LOC113527291 LOC108274042 other upstream 854142 5768528 ~ 5791270 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnap-ugg-46 NA coding NC_048579.1 CM023233.2 41281506 ~ 41281576 (+)
tiger barb (Puntius tetrazona) trnap-ugg_54 NA coding NC_056718.1 CM032087.1 2161223 ~ 2161293 (-)
mexican tetra (Astyanax mexicanus) trnap-ugg_44 NA misc NW_019171833.1 APWO02001431.1 31209 ~ 31279 (+)