trnap-ugg_13


Basic Information

Item Value
gene id trnap-ugg_13
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4915505 ~ 4915576 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnap-ugg_13
GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-ugg_13 True 72 tRNA 0.61 1 4915505 4915576

Neighbor

gene id symbol gene type direction distance location
trnap-ugg_12 NA coding downstream 1119 4914316 ~ 4914386 (-)
trnap-ugg_11 NA coding downstream 2308 4913126 ~ 4913197 (-)
trnap-ugg_10 NA coding downstream 3497 4911938 ~ 4912008 (-)
trnap-ugg_9 NA coding downstream 5875 4909559 ~ 4909630 (-)
trnap-agg_3 NA coding downstream 7066 4908368 ~ 4908439 (-)
trnap-agg_4 NA coding upstream 2240 4917816 ~ 4917887 (-)
pagr1 pagr1 coding upstream 76366 4991942 ~ 4998332 (-)
g6pc3 g6pc3 coding upstream 340688 5256264 ~ 5265357 (-)
tmem101 tmem101 coding upstream 374136 5289712 ~ 5294398 (-)
trnai-uau_5 NA coding upstream 386537 5302113 ~ 5302205 (-)
G190885 NA non-coding downstream 164628 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 248934 4666312 ~ 4666571 (-)
G190829 NA non-coding downstream 318682 4596539 ~ 4596823 (-)
G190821 NA non-coding downstream 339975 4573682 ~ 4575530 (-)
G190742 NA non-coding downstream 626702 4288417 ~ 4288803 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding upstream 467419 5382995 ~ 5387137 (-)
G191413 NA non-coding upstream 527386 5442962 ~ 5445167 (-)
G191424 NA non-coding upstream 567044 5482620 ~ 5484667 (-)
G191463 NA non-coding upstream 750597 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 752308 5667884 ~ 5669753 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2060012 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 2087753 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 2104114 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 2305732 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 2704526 2194344 ~ 2210979 (-)
G191056 taok2,LOC108273910 other upstream 33587 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 143922 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 569115 5484691 ~ 5490925 (-)
G191430 NA other upstream 695544 5611120 ~ 5613954 (-)
LOC113527291 LOC108274042 other upstream 852952 5768528 ~ 5791270 (-)

Expression


Co-expression Network