trnap-ugg_20


Basic Information

Item Value
gene id trnap-ugg_20
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6788695 ~ 6788766 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnap-ugg_20
GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-ugg_20 True 72 tRNA 0.61 1 6788695 6788766

Neighbor

gene id symbol gene type direction distance location
trnap-agg_8 NA coding upstream 1093 6787531 ~ 6787602 (+)
trnap-cgg_6 NA coding upstream 2272 6786352 ~ 6786423 (+)
trnap-ugg_19 NA coding upstream 3429 6785195 ~ 6785266 (+)
trnap-agg_7 NA coding upstream 4610 6784014 ~ 6784085 (+)
trnap-agg_6 NA coding upstream 5764 6782860 ~ 6782931 (+)
trnap-cgg_7 NA coding downstream 1108 6789874 ~ 6789945 (+)
sgms1 sgms1 coding downstream 7241 6796007 ~ 6815445 (+)
prkg1b prkg1,prkg1b,LOC107654050,LOC107695529,LOC106589397 coding downstream 73305 6862071 ~ 7015737 (+)
dkk1b dkk1 coding downstream 233157 7021923 ~ 7023638 (+)
bicc1b bicc1,bicc1b,LOC107653928,LOC107695510 coding downstream 658752 7447518 ~ 7514069 (+)
G192043 NA non-coding upstream 3099 6778164 ~ 6785596 (+)
G192029 NA non-coding upstream 91725 6696732 ~ 6696970 (+)
G191868 NA non-coding upstream 315229 6463389 ~ 6473466 (+)
G191866 NA non-coding upstream 327681 6460811 ~ 6461014 (+)
G191719 NA non-coding upstream 517810 6268524 ~ 6270885 (+)
G192394 NA non-coding downstream 610577 7399343 ~ 7399628 (+)
G192422 NA non-coding downstream 685671 7474437 ~ 7475004 (+)
G192591 NA non-coding downstream 1150275 7939041 ~ 7939584 (+)
G192650 NA non-coding downstream 1280377 8069143 ~ 8071592 (+)
G192644 NA non-coding downstream 1338007 8126773 ~ 8141060 (+)
LOC113527389 NA other upstream 60304 6725321 ~ 6728391 (+)
G191581 NA other upstream 805458 5969743 ~ 5983237 (+)
LOC113527671 LOC108441166,LOC108273636 other upstream 1047790 5730154 ~ 5740905 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other upstream 1448132 5330042 ~ 5340563 (+)
gngt2b NA other upstream 1483786 5303077 ~ 5304909 (+)
asah2 asah2,LOC107598643 other downstream 33974 6822740 ~ 6836383 (+)
tfam tfam other downstream 639779 7428545 ~ 7436372 (+)
G192484 ank3 other downstream 817215 7605981 ~ 7628111 (+)
LOC113527534 dnah9 other downstream 2479727 9268493 ~ 9357961 (+)
G193383 LOC108273473 other downstream 2579477 9368243 ~ 9369915 (+)

Expression


Co-expression Network