trnaq-cug_15


Basic Information

Item Value
gene id trnaq-cug_15
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9513764 ~ 9513835 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnaq-cug_15
GGTTCCATGGTGTAATGGTTAGCACTCTGGACTCTGAATCCAGCGATCCGAGTTCAAATCTCGGTGGGACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaq-cug_15 True 72 tRNA 0.51 1 9513764 9513835

Neighbor

gene id symbol gene type direction distance location
trnar-ccu_4 NA coding upstream 3968 9509724 ~ 9509796 (+)
trnad-guc_5 NA coding upstream 247430 9266263 ~ 9266334 (+)
trnad-guc_4 NA coding upstream 248919 9264774 ~ 9264845 (+)
map2k4b map2k4,LOC108274195,LOC108424869,LOC107556463,LOC107719678,LOC108433489 coding upstream 357476 9142501 ~ 9156288 (+)
adprm adprm coding upstream 374364 9135203 ~ 9139400 (+)
LOC113527682 LOC108273946 coding downstream 9521 9523356 ~ 9559377 (+)
plxdc1 LOC108274329,LOC108424883 coding downstream 92296 9606131 ~ 9627459 (+)
LOC113527304 lasp1,LOC108274031,LOC108424884,LOC108258608,LOC108413872,LOC107689048 coding downstream 116830 9630665 ~ 9643176 (+)
LOC113527805 NA coding downstream 121042 9634877 ~ 9635067 (+)
plcd3b LOC108273813,LOC108424888 coding downstream 193848 9707683 ~ 9722874 (+)
G193390 NA non-coding upstream 127370 9386143 ~ 9386394 (+)
G193386 NA non-coding upstream 133649 9379273 ~ 9380115 (+)
G193168 NA non-coding upstream 329675 9159433 ~ 9184089 (+)
G193169 NA non-coding upstream 355196 9158159 ~ 9158568 (+)
G193170 NA non-coding upstream 420517 9057399 ~ 9093247 (+)
G193458 NA non-coding downstream 2086 9515921 ~ 9516139 (+)
G193509 NA non-coding downstream 73330 9587165 ~ 9587819 (+)
G193542 NA non-coding downstream 138337 9652172 ~ 9653260 (+)
G193544 NA non-coding downstream 181074 9694909 ~ 9780955 (+)
G193645 NA non-coding downstream 310212 9824047 ~ 9824468 (+)
trnaq-cug_14 NA other upstream 1133 9512560 ~ 9512631 (+)
trnaq-cug_13 NA other upstream 1363 9512169 ~ 9512401 (+)
G193383 LOC108273473 other upstream 143849 9368243 ~ 9369915 (+)
LOC113527534 dnah9 other upstream 155803 9268493 ~ 9357961 (+)
G192484 ank3 other upstream 1885653 7605981 ~ 7628111 (+)
arhgap23b LOC108273815 other downstream 141452 9655287 ~ 9691595 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other downstream 1130991 10644826 ~ 10646547 (+)
si:ch73-139e5.4 LOC108273417 other downstream 1719755 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 1772362 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 2100064 11613899 ~ 11621269 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025583 NA non-coding NC_007114.7 CM002887.2 37599267 ~ 37616357 (+)
rainbow trout (Oncorhynchus mykiss) trnaq-cug-3 NA coding NC_048580.1 CM023234.2 8927090 ~ 8927161 (+)
eurasian perch (Perca fluviatilis) trnaq-cug_14 NA coding NC_053126.1 CM020923.1 11486854 ~ 11486925 (-)
tiger barb (Puntius tetrazona) trnaq-cug_92 NA coding NW_025048651.1 JAEQBD010000996.1 164133 ~ 164204 (-)
tiger barb (Puntius tetrazona) trnas-aga_106 NA coding NC_056702.1 CM032071.1 26711603 ~ 26711685 (-)
mexican tetra (Astyanax mexicanus) trnaq-cug_34 NA misc NW_019172923.1 APWO02000100.1 71321 ~ 71392 (+)