trnaq-cug_16


Basic Information

Item Value
gene id trnaq-cug_16
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11286197 ~ 11286268 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnaq-cug_16
GGTTCCATGGTGTAATGGTTAGCACTCTGGACTCTGAATCCAGCGATCCGAGTTCAAATCTCGGTGGAACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaq-cug_16 True 72 tRNA 0.50 1 11286197 11286268

Neighbor

gene id symbol gene type direction distance location
chadlb chadl,LOC108413512 coding upstream 7542 11273129 ~ 11278655 (+)
rangap1b LOC108274340 coding upstream 13751 11265411 ~ 11272446 (+)
csdc2a csdc2,csdc2a,LOC101165181,LOC107584207,LOC105919973,LOC102235694 coding upstream 54450 11227745 ~ 11231747 (+)
aco2 aco2,LOC108273913,LOC107554054,LOC107692062,LOC107731401,LOC107734200,LOC107584097 coding upstream 60299 11216242 ~ 11225898 (+)
tefa LOC108273914 coding upstream 76480 11202556 ~ 11209717 (+)
ep300a LOC108273944,LOC108413510 coding downstream 4785 11291053 ~ 11314637 (+)
desi1b LOC108273997 coding downstream 52749 11339017 ~ 11343084 (+)
shisa8b LOC108273995 coding downstream 68937 11355205 ~ 11374268 (+)
gna13a LOC108273768,LOC108444258,LOC107660858,LOC107734232,LOC107601276,LOC107584085 coding downstream 127860 11414128 ~ 11420071 (+)
LOC113527352 amz2 coding downstream 134885 11421153 ~ 11424736 (+)
G194360 tnrc6b,LOC105888746,LOC107734183,LOC107554046 non-coding upstream 79221 11135232 ~ 11206976 (+)
G194380 NA non-coding upstream 165647 11120318 ~ 11120550 (+)
G194293 NA non-coding upstream 190019 11093163 ~ 11096178 (+)
G194365 tnfrsf17 non-coding upstream 222515 11062164 ~ 11063682 (+)
G194278 NA non-coding upstream 318164 10965638 ~ 10968033 (+)
G194571 LOC108273766 non-coding downstream 92193 11378461 ~ 11379190 (+)
G194627 NA non-coding downstream 306624 11592892 ~ 11593091 (+)
G194623 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding downstream 311262 11597530 ~ 11602441 (+)
G194748 NA non-coding downstream 432629 11718897 ~ 11719113 (+)
G194828 NA non-coding downstream 752235 12038503 ~ 12038728 (+)
si:ch73-139e5.4 LOC108273417 other upstream 37984 11233590 ~ 11248213 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 639650 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 1594602 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 1770581 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 1772362 9513764 ~ 9513835 (+)
tmem106a tmem106a other downstream 327631 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 776540 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 1186411 12472679 ~ 12473983 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 1672667 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 2197033 13483301 ~ 13559085 (+)

Expression


Co-expression Network