trnar-ccu_4


Basic Information

Item Value
gene id trnar-ccu_4
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9509724 ~ 9509796 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnar-ccu_4
GCCccagtggcctaatggataaggCACTGGCCTCCTAAGCCAGGgattgtgggttcgagtcccatctggggtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ccu_4 True 73 tRNA 0.60 1 9509724 9509796

Neighbor

gene id symbol gene type direction distance location
trnad-guc_5 NA coding upstream 243390 9266263 ~ 9266334 (+)
trnad-guc_4 NA coding upstream 244879 9264774 ~ 9264845 (+)
map2k4b map2k4,LOC108274195,LOC108424869,LOC107556463,LOC107719678,LOC108433489 coding upstream 353436 9142501 ~ 9156288 (+)
adprm adprm coding upstream 370324 9135203 ~ 9139400 (+)
trnal-aag_6 NA coding upstream 401791 9107852 ~ 9107933 (+)
LOC113527682 LOC108273946 coding downstream 13560 9523356 ~ 9559377 (+)
plxdc1 LOC108274329,LOC108424883 coding downstream 96335 9606131 ~ 9627459 (+)
LOC113527304 lasp1,LOC108274031,LOC108424884,LOC108258608,LOC108413872,LOC107689048 coding downstream 120869 9630665 ~ 9643176 (+)
LOC113527805 NA coding downstream 125081 9634877 ~ 9635067 (+)
plcd3b LOC108273813,LOC108424888 coding downstream 197887 9707683 ~ 9722874 (+)
G193390 NA non-coding upstream 123330 9386143 ~ 9386394 (+)
G193386 NA non-coding upstream 129609 9379273 ~ 9380115 (+)
G193168 NA non-coding upstream 325635 9159433 ~ 9184089 (+)
G193169 NA non-coding upstream 351156 9158159 ~ 9158568 (+)
G193170 NA non-coding upstream 416477 9057399 ~ 9093247 (+)
G193458 NA non-coding downstream 6125 9515921 ~ 9516139 (+)
G193509 NA non-coding downstream 77369 9587165 ~ 9587819 (+)
G193542 NA non-coding downstream 142376 9652172 ~ 9653260 (+)
G193544 NA non-coding downstream 185113 9694909 ~ 9780955 (+)
G193645 NA non-coding downstream 314251 9824047 ~ 9824468 (+)
G193383 LOC108273473 other upstream 139809 9368243 ~ 9369915 (+)
LOC113527534 dnah9 other upstream 151763 9268493 ~ 9357961 (+)
G192484 ank3 other upstream 1881613 7605981 ~ 7628111 (+)
tfam tfam other upstream 2073352 7428545 ~ 7436372 (+)
asah2 asah2,LOC107598643 other upstream 2673341 6822740 ~ 6836383 (+)
trnaq-cug_13 NA other downstream 2373 9512169 ~ 9512401 (+)
trnaq-cug_14 NA other downstream 2764 9512560 ~ 9512631 (+)
mrpl58 mrpl58 other downstream 2988 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other downstream 3968 9513764 ~ 9513835 (+)
arhgap23b LOC108273815 other downstream 145491 9655287 ~ 9691595 (+)

Expression


Co-expression Network