trnas-gcu_4


Basic Information

Item Value
gene id trnas-gcu_4
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6230222 ~ 6230303 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnas-gcu_4
GACGAGGTGGCCGAGAGGTTAAGGTGATGGACTGCTAATCCATTGTGCTCTGCATGCGTGGGTTTGAATCCTCCCCTCGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnas-gcu_4 True 82 tRNA 0.56 1 6230222 6230303

Neighbor

gene id symbol gene type direction distance location
trnas-gcu_3 NA coding upstream 5037 6225104 ~ 6225185 (+)
trnal-aag_3 NA coding upstream 6116 6224025 ~ 6224106 (+)
trnas-gcu_2 NA coding upstream 6605 6223536 ~ 6223617 (+)
trnal-uag NA coding upstream 7424 6222717 ~ 6222798 (+)
trnal-aag_2 NA coding upstream 13774 6216367 ~ 6216448 (+)
kif22 kif22,LOC107654032,LOC107664627 coding downstream 11240 6241543 ~ 6251999 (+)
prrt2 LOC108273486 coding downstream 23645 6253948 ~ 6259961 (+)
cep55l cep55 coding downstream 31367 6261670 ~ 6268234 (+)
pde6c pde6c,LOC107557364,LOC107598595 coding downstream 43263 6273566 ~ 6283915 (+)
lgi1b lgi1,lgi1b,LOC107664615,LOC107743957,LOC107598600,LOC107654035,LOC107708938 coding downstream 72075 6302378 ~ 6310386 (+)
G191711 NA non-coding upstream 13128 6215273 ~ 6217094 (+)
G191595 NA non-coding upstream 175017 6001068 ~ 6055205 (+)
G191591 NA non-coding upstream 281636 5946225 ~ 5948586 (+)
G191588 NA non-coding upstream 289375 5940621 ~ 5940847 (+)
G191568 NA non-coding upstream 322046 5906464 ~ 5908176 (+)
G191719 NA non-coding downstream 38221 6268524 ~ 6270885 (+)
G191866 NA non-coding downstream 230508 6460811 ~ 6461014 (+)
G191868 NA non-coding downstream 233086 6463389 ~ 6473466 (+)
G192029 NA non-coding downstream 466429 6696732 ~ 6696970 (+)
G192043 NA non-coding downstream 547861 6778164 ~ 6785596 (+)
G191581 NA other upstream 246985 5969743 ~ 5983237 (+)
LOC113527671 LOC108441166,LOC108273636 other upstream 489317 5730154 ~ 5740905 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other upstream 889659 5330042 ~ 5340563 (+)
gngt2b NA other upstream 925313 5303077 ~ 5304909 (+)
G190865 NA other upstream 1390853 4755097 ~ 4839369 (+)
LOC113527389 NA other downstream 495018 6725321 ~ 6728391 (+)
asah2 asah2,LOC107598643 other downstream 592437 6822740 ~ 6836383 (+)
tfam tfam other downstream 1198242 7428545 ~ 7436372 (+)
G192484 ank3 other downstream 1375678 7605981 ~ 7628111 (+)
LOC113527534 dnah9 other downstream 3038190 9268493 ~ 9357961 (+)

Expression


Co-expression Network