trnav-uac_7


Basic Information

Item Value
gene id trnav-uac_7
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5473398 ~ 5473470 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnav-uac_7
GGTTCCAtagtgtagtggttatcacGTCTGCTTTACACGCAGAAGGTCCTGGGTTCGAGCCCCAGTGGAACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnav-uac_7 True 73 tRNA 0.53 1 5473398 5473470

Neighbor

gene id symbol gene type direction distance location
lrrc45 lrrc45,LOC107736618 coding downstream 17039 5446472 ~ 5456359 (-)
sgca LOC108273949,LOC108444285 coding downstream 56791 5405182 ~ 5416607 (-)
LOC113527073 LOC108274342,LOC108274341 coding downstream 150923 5312244 ~ 5322475 (-)
trnai-uau_5 NA coding downstream 171193 5302113 ~ 5302205 (-)
tmem101 tmem101 coding downstream 179000 5289712 ~ 5294398 (-)
prodh2 prodh2,zgc:92040 coding upstream 28953 5502423 ~ 5509397 (-)
eif3c LOC100304733,LOC107693689,LOC107708970,LOC107562013,LOC107689927,LOC107571764 coding upstream 39297 5512767 ~ 5526387 (-)
ppp4cb ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 coding upstream 55179 5528649 ~ 5539726 (-)
si:ch211-136m16.8 NA coding upstream 67416 5540886 ~ 5545885 (-)
LOC117598535 NA coding upstream 72371 5545841 ~ 5554907 (-)
G191413 NA non-coding downstream 28231 5442962 ~ 5445167 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding downstream 86261 5382995 ~ 5387137 (-)
G190885 NA non-coding downstream 722521 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 806827 4666312 ~ 4666571 (-)
G190829 NA non-coding downstream 876575 4596539 ~ 4596823 (-)
G191424 NA non-coding upstream 9150 5482620 ~ 5484667 (-)
G191463 NA non-coding upstream 192703 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 194414 5667884 ~ 5669753 (-)
G191468 NA non-coding upstream 215124 5688594 ~ 5689568 (-)
G191490 NA non-coding upstream 266508 5739978 ~ 5740199 (-)
LOC113527048 LOC108274181 other downstream 409980 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 520539 4949163 ~ 4952859 (-)
trnap-cgg_3 NA other downstream 554421 4911734 ~ 4918977 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2617905 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 2645646 2793046 ~ 2827752 (-)
gdpd3b gdpd3 other upstream 11221 5484691 ~ 5490925 (-)
G191430 NA other upstream 137650 5611120 ~ 5613954 (-)
LOC113527291 LOC108274042 other upstream 295058 5768528 ~ 5791270 (-)
itga3b itga3 other upstream 1073471 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1926530 7400000 ~ 7418378 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnav-uac-98 NA coding NC_050571.1 CM025858.1 28353617 ~ 28353689 (+)
striped catfish (Pangasianodon hypophthalmus) trnav-uac_4 NA coding NC_047605.1 CM018551.1 19313496 ~ 19313568 (-)
tiger barb (Puntius tetrazona) trnav-uac_6 NA coding NC_056712.1 CM032081.1 24051703 ~ 24051775 (+)
mexican tetra (Astyanax mexicanus) trnav-uac_4 NA coding NC_035920.1 CM008323.1 16630979 ~ 16631051 (-)