G20537


Basic Information

Item Value
gene id G20537
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 2455230 ~ 2455434 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU24459
CTATCTTTGTGGGTGGCGTATAAAACACTGAACCCTGCCCTCACATGGCCCTTCATCAACTGCCGTCTGCATGGGACGGAGACACAGCAAAGCCCGAGGGGGAAGACCCGCTGCCAAAGACAAGCCTGCGAACAAATGGTAACATGACCAAAACTGCCCGAGCACTActgaatttatttctttttcccaaGCTTTATTCACCGAC

Function

GO: NA

KEGG:

id description
ko05203 Viral carcinogenesis
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU24459 True 205 lncRNA 0.51 1 2455230 2455434

Neighbor

gene id symbol gene type direction distance location
lnp1 lnp1 coding downstream 62464 2387942 ~ 2392766 (-)
tmem45a tmem45a coding downstream 71445 2366588 ~ 2383785 (-)
sft2d2a LOC108271516 coding downstream 94281 2353785 ~ 2360949 (-)
chd1l chd1l coding downstream 101720 2315145 ~ 2353510 (-)
negr1 negr1,LOC107585169,LOC107673552,LOC107726517,LOC107582736,LOC107685309,LOC107711106 coding downstream 193857 2071642 ~ 2261373 (-)
LOC113545966 LOC108271807,LOC108261604 coding upstream 212388 2667822 ~ 2686894 (-)
LOC113545965 LOC108271807,LOC108261604 coding upstream 232596 2688030 ~ 2700352 (-)
LOC113545857 LOC108261604,LOC108271807 coding upstream 246946 2702380 ~ 2715667 (-)
zgc:152986 LOC108271810 coding upstream 262463 2717897 ~ 2721343 (-)
ghrl LOC108272045,LOC100329224,LOC100304469 coding upstream 283011 2738445 ~ 2741771 (-)
G20436 NA non-coding downstream 344290 2086062 ~ 2110940 (-)
G20434 NA non-coding downstream 447567 1924755 ~ 2007663 (-)
G20437 NA non-coding downstream 542958 1909716 ~ 1912272 (-)
G20430 NA non-coding downstream 550955 1902365 ~ 1904275 (-)
G20158 rp2,LOC107753404,LOC107685300,LOC107711097 non-coding downstream 599775 1833303 ~ 1855455 (-)
G20567 NA non-coding upstream 94912 2550346 ~ 2550547 (-)
G20643 NA non-coding upstream 206000 2661434 ~ 2661705 (-)
G20644 NA non-coding upstream 206878 2662312 ~ 2662630 (-)
G20675 ccdc174,LOC107711012,LOC107673461,LOC107585200 non-coding upstream 290174 2745608 ~ 2747092 (-)
G20801 NA non-coding upstream 492744 2948178 ~ 2948401 (-)
slc9a7 slc9a7,LOC107711095,LOC107673530,LOC107753405 other downstream 632562 1756160 ~ 1822668 (-)
slc48a1b LOC108271834,LOC107585148,LOC108441111,LOC107733581,LOC107711080,LOC103044934,LOC107685336 other downstream 1417634 1028827 ~ 1037596 (-)
LOC113545844 LOC108272247 other downstream 1841842 594565 ~ 613388 (-)
LOC117595947 LOC108272222 other downstream 1887710 546880 ~ 567520 (-)
LOC113545841 LOC108272248 other downstream 1931633 504575 ~ 523597 (-)
LOC113545802 NA other upstream 149220 2604654 ~ 2633680 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other upstream 892874 3348308 ~ 3371154 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other upstream 1260373 3715807 ~ 3736886 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other upstream 1294584 3750018 ~ 3777988 (-)
G21434 NA other upstream 1801234 4256668 ~ 4257087 (-)

Expression


Co-expression Network