G20856


Basic Information

Item Value
gene id G20856
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3210461 ~ 3210931 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU24827
ctttttacaaaggtcattgtctcaaagcagctttacacaaacaaaagtaaagtgaagtgtgtgtgtgtgccgtctctgatgagcaagcagggcgacggtggcaaggaaaaactccctgagatggtgataggaagaaaccttgagaggaaccaggctcaacagagaacccatcctcatatgggtttacactgtagtgtgcgtgtgtgtgagcacaatgtgtgttggtgtagtacatggaaaacagctgaagcgttttcgtggcagtatgaagcattgccggtggacaggtccagagtgaaggggggggaggtctggattaccagcagctcaggagtgatgctcatctggtccagagcgtaggggggtctggatcaccggcagctcaggagtgtagctcggcagaaggagaaggaaagtggttaggtacactcacagtcaccgtgtggagataaaactcaacatccacgagtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24827 True 471 lncRNA 0.51 1 3210461 3210931

Neighbor

gene id symbol gene type direction distance location
LOC113545949 LOC108271656 coding upstream 29072 3168038 ~ 3181389 (+)
ppig ppig coding upstream 44712 3152768 ~ 3165749 (+)
klhl41b LOC108271921,LOC103025159,LOC108438036,LOC107672655,LOC107557135,LOC107686793,LOC107582363,LOC107746633 coding upstream 58755 3144893 ~ 3151706 (+)
col28a2b LOC108271920,LOC108438056,LOC103354592,LOC103389749,LOC101477258,LOC102210360 coding upstream 68872 3100344 ~ 3141589 (+)
si:dkey-197j19.6 LOC108271935 coding upstream 116831 3085052 ~ 3093630 (+)
LOC113545972 LOC108272174,LOC108271666,LOC108262055,LOC108271668 coding downstream 8409 3219340 ~ 3224174 (+)
phospho2 phospho2 coding downstream 18791 3229722 ~ 3232728 (+)
ssb ssb coding downstream 22608 3233539 ~ 3241973 (+)
erich2 LOC108271660 coding downstream 72957 3283888 ~ 3294512 (+)
gad1b gad1b,LOC108271649,LOC108438042,LOC107746600,LOC107686757,LOC107582324 coding downstream 86383 3297314 ~ 3337934 (+)
G20848 NA non-coding upstream 57947 3152314 ~ 3152514 (+)
G20807 NA non-coding upstream 258583 2951677 ~ 2951878 (+)
G20802 NA non-coding upstream 261615 2948610 ~ 2948846 (+)
G20401 NA non-coding upstream 842243 2366609 ~ 2368218 (+)
G20372 chd1l non-coding upstream 879577 2329407 ~ 2330884 (+)
LOC113545973 NA non-coding downstream 4683 3215614 ~ 3218711 (+)
G20868 NA non-coding downstream 120831 3331762 ~ 3353685 (+)
LOC117599318 NA non-coding downstream 168960 3379891 ~ 3382596 (+)
G21136 NA non-coding downstream 438400 3649331 ~ 3651978 (+)
G21138 NA non-coding downstream 442820 3653751 ~ 3653967 (+)
LOC113545950 NA other upstream 17000 3182307 ~ 3193461 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 146434 3053331 ~ 3064027 (+)
trnaf-gaa_12 NA other upstream 219980 2990409 ~ 2990481 (+)
trnaf-gaa_11 NA other upstream 221586 2988803 ~ 2988875 (+)
trnaf-gaa_10 NA other upstream 224028 2986218 ~ 2986433 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other downstream 129515 3340446 ~ 3367287 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other downstream 339294 3550225 ~ 3578308 (+)
LOC117599945 LOC108272174,LOC108262055 other downstream 368817 3579748 ~ 3587643 (+)
LOC113545962 NA other downstream 517721 3728652 ~ 3742306 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 1064142 4275073 ~ 4327860 (+)

Expression


Co-expression Network