G20868


Basic Information

Item Value
gene id G20868
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3331762 ~ 3353685 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU24847
ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagaggggggaggaGAAGAAAACTGACCGAGCACTGCTGACTCCGGCTCCTGGTTGGTCGCACGGTTTGATCAGCCATTTGGGGGCGGGGTCAGGCCCACTTTCTGTTTGTTAGCTTAGAAgttgttacacacacacgcacacatacacacctctcACAAAAAGTAATGTATCAACATGCTGCAAATTCCTGGCAGATAAACTTCTCATATATGACATCTCTTAAAttgtacagtatttaaaaaaaaaaaaaacaggccaaaCTGAAAACTAAAAAGCAACACTGAGTAGCAGCAACGTGAACATTGCTTCAGGATGACAGTGAGACAGTCCAGCAGAGATCCTGGACCTGCCCTGAACATGATTTGTTATAAAACATGACTGTCGCGTGCCATTTATTTCAACCAATCACTGCCATCTGATATCATCAGCATGTGCACCGCATGCTCCGCCCACTCCTCCTGTATTTTAGTTCATTAAGCTAAAGATCTACTTAacgtttttttattctgatcatGTAGAGTACGCTGTTCACTATGGACGAGAACGGACACGCCTCCTTTAACCCGGAAAAGAACGGAAAATGCATTTCTTCCAAACTCGCgcataataaacagaaatctaCGGCAGTTAATGAATTCCGTCACTAAAAGAAGACTAACTTACTAAAAGTCAACCTCGACTTGATTGACTTCAGATCATatcatttgcatggattactgcacgtTTATATGTGGAATGTACTGTTGAGGTTAAACTGCTTATTTTTATACAGCGTTTCGCAGACGCCTTCAaccagagcgacttatagaagagctttggagtctcgatcaaaaacacatcctcatgctagtccACTAACTCAGTGACTAAGAGTACAAATCAGGAACGTTTTGTGAAAACCAACCATTTTATATTACTAGCATTAACTAAAGAATATAAAGTTGAAAGAAAACCagcccccccacacacacaaattaagacaaataaaactcattcgataaataaataatcattcaattatgacagaAGAAATGGCTCACtcgttattattaatattacatattattaaataGTTTTTGGCACGatagtgagtcaaaataacttccatatctgcctttcagcctttaccctgagGGTTCATTTCGTGCTCCCGGCTGTCTGCACAATTTACCTTTTATGGaatttgtgggcgtcactataTGCTAATGAGTTGTGTCTGGAACTCTGCACATTACAGGTGCAACATATGCGTTAGCTCGAAAGAAATCAGCGAAACTTTCTTTAGGTGGAAATTTTAGTTTGGTTCGTCTTatgcaaacatatacacacacgacaTAAGCTGTACTATATctgataaatgaacacaaattcctCAAACATGTTTGGAAGCGAAGCTCTAAATCTATACAATGTGTTCTTTCAGAGAAGGACTCGTGTGGGTCCAATGGCACATGGACACCACAGAACCTCTTTACTGCATTGCTCCAGTGCTAGAAAACTGGAGAAACCTGCAtaagaacagtcacacagttaGCTTATTTATGGATATCAATGCCTGCCTTTACACTGCGATTATAAGTAAGTTTGACAAAAAGGTTTTCTGATGTCTCAGTGCAGGAAAATGCTAATCAGTGGATAGATATTAGCTTGAAAACACTGGAATATAACGTTAAAAATTAACGTATTAGTATTTAGCGAAAGTATTTAGCTGAAAAGGCTAAAATACTGACTGTAGTCGACCATTTAACCCTGAACAAGCGCTCTTAGTAGTGTGAAGAAAttactgattttgtttttatgaactgaaacacagacacacaatgtTTTAACTCGGAAAAAGTTTGGAGGCAACTGAAAAGGCTCAGTTAACATGAGCTAGCCGAGACTGCAAAAAACGATTTCGCTTAATTctctaaacaaaaacacaatacTACACGAATGGCTCCCTAGGCACTATTCTTTACACACCACGAAGACAGGGAACTGAAATTAGTGACCACGTAAAACACAAGTACCCCGTCGCTGCATAACCCAAAGTCAAAAAAAAGTCCATGGGGTGGAGTCGGACCTGATCCAGCTTCTACTTCCTGGGCGGAGTCGAGCCAAACGTCCAGGGAGTGGAGTGTGTTTCAAgctgtgtaagtgtgtttaatgtgttgtacagtgttgtgtaggTTAGGGTTATAGGATCAGATATCCAAACTGCTGGATCAGATccgactccaccccctggacttctGGTTCTGCAGCACGAACTATCTCCGTGAACACGCACAATTACTTCACAAAACGCTTGCATTCAACGTTAGAGGCGTTGCCATAGTAACTCGCTGCATTCCTCAGCGAAGATGTGAACCAATCAAACCAAAAATGacgcagtgcattatgggtactTCATGGCCTCTAGGGGACATTGTTTGTACACCATCGTGATCATGGTGCGTTAAAAGCGTGCGCTCACAGTATATTCTCAGACATCAGACCTTGAAGAGAGTGCACTGTATTGTgtgaagttgaaaaaaaaaaaaaaatccaatgttGGAATTTTCACAGGCgcacactgatgacatcagAGGCCAACGAttggttaaataaaatgttgatcCAGGTGTTGATTATCTATTTGAAGAAATCAAGTTTACCCTGAaccttctctctcacactcgcgcacacacacagcaggaggaAGCTCATCTCCATTCTatgcacaatttaaaaaatagttcacatatgccaacacacacacactcgcacgaCATTTCCCAACAGCatctctgatacacacacacagtaggggatataagacaaagaaataaCAGAAAAGTGTGAAGTGTAATGCCCTCCCCCAACacatatgcgcacacacacgcgcacacacacacgcacacacccccTCTCCTGTACACTCGTGTATAACCCAGCCACCTTGTGACATTAgtattcaagtttttttttttcccccctctctcacCTGTGCTCAACATCCCATCAAGTGCACTTTCGCCATGGCAACTGTAGCCAGAACTGTGTGTCCTTAGGCCTACATCCTGACCCGTAAACCCCTCCCACTTTCctcacgtacacacacaagGGCAATCGCTCAAATCCAAAAAAGTCAATCACTTTTCAAGCCAGACAGATCAACATGAGATCAGTATGAGATGATCGAGGAGGAGGCGGGGCTAGTGGGCGTGGCCTGCAGGTTTCCGGACGAGTTGGTTCGCCGGATGTGAGGGAGCAGGTACGAGTCGCTACAGAGCTGGTGGACGTCGTAACGGTCCTCCTTCCTGTAAGCCAGACAGCGCCGAATAAACGCCTGCGCAGAGACAacgagaaagagggagagggaggagtcAACAGATCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24847 True 3444 lncRNA 0.43 2 3331762 3353685

Neighbor

gene id symbol gene type direction distance location
erich2 LOC108271660 coding upstream 37250 3283888 ~ 3294512 (+)
ssb ssb coding upstream 89789 3233539 ~ 3241973 (+)
phospho2 phospho2 coding upstream 99034 3229722 ~ 3232728 (+)
LOC113545972 LOC108272174,LOC108271666,LOC108262055,LOC108271668 coding upstream 107588 3219340 ~ 3224174 (+)
LOC113545949 LOC108271656 coding upstream 150373 3168038 ~ 3181389 (+)
dync1i2b dync1i2b,LOC108271647,LOC107582325,LOC108438045,LOC107686754,LOC107557143 coding downstream 23829 3377514 ~ 3391569 (+)
sema5bb LOC108271639,LOC108430840 coding downstream 94465 3448150 ~ 3515083 (+)
LOC113545865 NA coding downstream 187124 3540809 ~ 3544535 (+)
LOC113545866 LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668 coding downstream 235382 3589067 ~ 3613541 (+)
fam210b fam210b,LOC102797503,LOC106566122 coding downstream 280411 3634096 ~ 3649254 (+)
LOC113545973 NA non-coding upstream 113051 3215614 ~ 3218711 (+)
G20856 NA non-coding upstream 120831 3210461 ~ 3210931 (+)
G20848 NA non-coding upstream 179248 3152314 ~ 3152514 (+)
G20807 NA non-coding upstream 379884 2951677 ~ 2951878 (+)
G20802 NA non-coding upstream 382916 2948610 ~ 2948846 (+)
LOC117599318 NA non-coding downstream 26206 3379891 ~ 3382596 (+)
G21136 NA non-coding downstream 295646 3649331 ~ 3651978 (+)
G21138 NA non-coding downstream 300066 3653751 ~ 3653967 (+)
G21168 NA non-coding downstream 313060 3666745 ~ 3666972 (+)
G21178 NA non-coding downstream 328296 3681981 ~ 3682254 (+)
LOC113545950 NA other upstream 138301 3182307 ~ 3193461 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 267735 3053331 ~ 3064027 (+)
trnaf-gaa_12 NA other upstream 341281 2990409 ~ 2990481 (+)
trnaf-gaa_11 NA other upstream 342887 2988803 ~ 2988875 (+)
trnaf-gaa_10 NA other upstream 345329 2986218 ~ 2986433 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other downstream 196540 3550225 ~ 3578308 (+)
LOC117599945 LOC108272174,LOC108262055 other downstream 226063 3579748 ~ 3587643 (+)
LOC113545962 NA other downstream 374967 3728652 ~ 3742306 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 921388 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 997992 4351677 ~ 4351748 (+)

Expression


Co-expression Network