LOC117599945 (LOC108272174,LOC108262055)


Basic Information

Item Value
gene id LOC117599945
gene name LOC108272174,LOC108262055
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3579748 ~ 3587643 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU25165
TTCACACATAGCTCTTTCCGACACAGCTAGAAGGGGAAGTGGGTGCAGCATCACTCTCTGGTTAAGACACAGATGAAGACACAGCACATTCACAGAGCGGGACAGAGacagtaacagtgtgtaacagaaCAGGAgctttaatatctttttatctttttgaaGTGGAGTTGGTGTGGAGATCTGTGAGTGTGAACTCAGGATGAAGATCCTCTTCATCTTCACCCTCTGTCTGATCTCAGATGGAGGAGCCTCCAAGGAAGTAACAGGATATTCAGGAGGAGGAGTCCTTATCAAGTGCAAGTATGGTGCAGAattcacacaaaataaaaaatatttctgtaag
>XM_034314590.1
CATAGCTCTTTCCGACACAGCTAGAAGGGGAAGTGGGTGCAGCATCACTCTCTGGTTAAGACACAGATGAAGACACAGCACATTCACAGAGCGGGACAGAGacagtaacagtgtgtaacagaaCAGGAgctttaatatctttttatctttttgaaGTGGAGTTGGTGTGGAGATCTGTGAGTGTGAACTCAGGATGAAGATCCTCTTCATCTTCACCCTCTGTCTGATCTCAGATGGAGGAGCCTCCAAGGAAGTAACAGGATATTCAGGAGGAGGAGTCCTTATCAAGTGCAAGTATGGTGCAGAattcacacaaaataaaaaatatttctgtaaggGTTCAAGGCCAGGCTGTTCTGACCAAATAAAGACAGAAGCTAAAAATGAGTGGATAAATTCAGGAAAATTCTCATTGTTTGATGACACCAAatcagcagtgttcagtgtgatgatcagagagCTCACTGTACAGGACACTGGGACATACCAGTGTGGAATTGATATAAATTTGTGGAGCGACATTTACACACCGGTGGAACTGAAGGTAAAGGAAGATCTGTCCTATGAGAAGTCCATCAGTGAGACTGTCCATGTAGGAGGAGATTTGAACTTCAGCTGTAAATACCCAGTATCCCTCAGGAATGACTCCAAGTTTCTCTGCAAGAGGCTGCAACTTGCTGATTGTTCTCATAAAGCATCTGTTAATGAAAGTAGGaaagatgtaaatatgaggaagTTCTCCCTGTATGATGACAGAGCAGAACAAATCTTCAATGTgagtattaaaaatgtaactaaGCAGGACTCTGGGGAATACTGGTGTGGAGCTGAAGCAGCCTGGAAATCTGATCATGGATACAAGATGTATTTCACACAGATCCACCTCACAGTTACTGAGCCACGTGTCTCAGGTTCAACCTCAAAACCAACACAAccttcatcattatcatcatcatcatcatcatcatcatcatcattgtcatcatcattgTCACCATcgttgtcatcatcatcatcatcatcaccatcaccatcgttggcatcatcatcatcatcatcatctgaccTTATACAAGCTTCTCCTCCTGCAGGATTACCAGCTTCCACTATGATCACTGTGTCTGtaattctgctgctgctgtttctgaTTGGAATCGTATTCCTCACTTTGACTCTACAAAAGAGACATAAGATGCAAggtacccacacacacagaaaacacatgaTAAAATGTTTAGGTGGGAGGATGTATTTGATGCAATCTGTTTGATGCAGTCTGAAgaagttaatgaagatgaatgcctgaataaaaaaaatgattcatgaTCGATTCTCCACAAGTCTGTttagctgatttttttctctaaagAAATATTTACTGCAGTACTTGCTATTTGCCAGATTTAAATTTGccagttttaaatattatagtgcagtctctctctctctctctctctctgtgatatcacaaccaaaaaaattcaagtggaaaacaaaagaaacaaaagtgaGCACAAACAT

Function

NR:

description
PREDICTED: CMRF35-like molecule 6 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25165 False 343 lncRNA 0.43 2 3579748 3580183
XM_034314590.1 True 1521 mRNA 0.40 5 3579754 3587643

Neighbor

gene id symbol gene type direction distance location
LOC113545865 NA coding upstream 35213 3540809 ~ 3544535 (+)
sema5bb LOC108271639,LOC108430840 coding upstream 64665 3448150 ~ 3515083 (+)
dync1i2b dync1i2b,LOC108271647,LOC107582325,LOC108438045,LOC107686754,LOC107557143 coding upstream 188179 3377514 ~ 3391569 (+)
gad1b gad1b,LOC108271649,LOC108438042,LOC107746600,LOC107686757,LOC107582324 coding upstream 241814 3297314 ~ 3337934 (+)
erich2 LOC108271660 coding upstream 285236 3283888 ~ 3294512 (+)
LOC113545866 LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668 coding downstream 1424 3589067 ~ 3613541 (+)
fam210b fam210b,LOC102797503,LOC106566122 coding downstream 46453 3634096 ~ 3649254 (+)
aamp aamp,LOC107750832 coding downstream 79633 3667276 ~ 3681466 (+)
nelfcd nelfcd,LOC107685805,LOC107554192,LOC107666106 coding downstream 98978 3686621 ~ 3704908 (+)
gnas gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173 coding downstream 267317 3854960 ~ 3920608 (+)
LOC117599318 NA non-coding upstream 197152 3379891 ~ 3382596 (+)
G20868 NA non-coding upstream 226063 3331762 ~ 3353685 (+)
LOC113545973 NA non-coding upstream 361037 3215614 ~ 3218711 (+)
G20856 NA non-coding upstream 368817 3210461 ~ 3210931 (+)
G20848 NA non-coding upstream 427234 3152314 ~ 3152514 (+)
G21136 NA non-coding downstream 61688 3649331 ~ 3651978 (+)
G21138 NA non-coding downstream 66108 3653751 ~ 3653967 (+)
G21168 NA non-coding downstream 79102 3666745 ~ 3666972 (+)
G21178 NA non-coding downstream 94338 3681981 ~ 3682254 (+)
G21197 NA non-coding downstream 125664 3713307 ~ 3714991 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 1440 3550225 ~ 3578308 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 212461 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 386287 3182307 ~ 3193461 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 515721 3053331 ~ 3064027 (+)
trnaf-gaa_12 NA other upstream 589267 2990409 ~ 2990481 (+)
LOC113545962 NA other downstream 141009 3728652 ~ 3742306 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 687430 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 764034 4351677 ~ 4351748 (+)
spega speg other downstream 1166623 4754266 ~ 4759645 (+)
G21835 NA other downstream 1500491 5088134 ~ 5088578 (+)

Expression


Co-expression Network