G21136


Basic Information

Item Value
gene id G21136
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3649331 ~ 3651978 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU25200
gattTAAATCAGGTTTAAAATAGCTCCACAGATACATatagaaatgacagaaattgTTACTGATCTTAAATTATAGGTATTAGTATTTTATGAATAGCTGTAAAAATAGCTCTAAAATTTTGATGTGATATTGATATGATTGATACTGATACGATTGATATTGATATGATTGATACTGATATGATTAGTGTGGCTTGGCACATATGGCTTGGCAACGGAGGACTAGCCTTATCCCACCCAATTTCATATGTATTTTCTATCAAAATACAcctcaaaattaaaataaaagatttttgaaATAATACCAGGCATCTGATGTTTATATGCATGTGGTGCTGCCGGGAGACATGAGACACAGCTGTGCGTGATAGCCGTGCACAAATAATACGTTACTATTTAGTGAAAATAAAGAGGACCAAACATTCATTTAATGGCTCCCACACTCCCAAACACATCCAAGTAGGCCAATATCATAATCTTTAGTGAAACTACACAggagactgttttttttttttttttttttttttttaatatctcacTCCCGTCTGCACCAGAAGGAATTCAGAATCATAATCTGAGTGTTTTAAATCACCAAGTACAGGGTGTACAAGGAATTCCTTTGTAGAATACAATACAatgcaacaacacacacacaaaaaaaccaaaaaaacatatctgtaattctgaccaatcctgctccTGCTCAAAATTTGACCAGTCCCCTCCACTCTTGCACTTAATATTTTGcctgcctgcaatattttctaatgaagtTGGctataatttgtaaaatataaactattgGGAAATTAAGCCatttgaccaggataaagcagttactgcaaatgaatgaattaaagtgGTAAAAGCAGCTCACAAGCATGCAAAGTGCTCCTTGGTGGTGGAAATAGCCACAAAGTAGAGGAATGCAGATAATTTGCCATGCCGACTCATGCCAAACTGTCTGGCGGAAAAACGCTGTAAGTGTGAGTAACACTGTTAGTAATATTGACACATTATTAAAGATAGTATTCTATACTcaccaagcactttattaggaacacctttacatcTATACATTCatggaattatttttttaattatcttttttaattaaattattaaaaaaaaattattttttaattatcagccaatcgtgtggcagcagtgcaatgcataaaatcatgcagatatgggcaagcagcttcagataatgttcacatcaaccatcagaaggaaaatggggaaaaatgtgatctcagtgattttgactgtagcatgattgttggtgccagatgggctggtttgagtatttctataactgctgatctttAACTGGGATTATCATGCAcaactgtctctagagtttactcagaatggtgcaataaagaaaaaacatccagttgtGGCAGTTCTGCggatggaaacgccttgttgataagagaggtcaacaggaaatggccagactggtttgagctgacagaaaggctacagtaactcaggtaaccactctgtacaattgtagtgagcagaaaagcatctcagaatgcacaacacgtcaaaccttgaggcggatgggctacaacagcagaagaccatctcaggttccacttctgtcagccaagaacacaaagctgaggctgcagtgggcacaggctcagcaaaactggatagttgaagactggaaaaatgtagccaggtttgatgaatctcaatttatGCCGAgtcacacagatggtagggttaGAATTTGGGggcaacagcatgaatccatgggcctaacctgccttgtgtcaacagtccagactAGTacaggtggtgtaatggtgtggggaatgttttcttggcacacctTTAATACCAATTAATCATCACATGAATGCCTATTTGCctcatgaaagtgcacctgaaaaatctgcaggaattgcgtgatgcaatcatgtcaacatcgACCAGAATCTAAAAGGAAtttttccaacaccttgtggaatccatgccatggagaattgaagctgttttgagagcaaagggaggtcCTATCcagtattcctaataaagtgtttgatgCATATAATAAAGGTATACCTATACGATCTGTAGTGGAAAAACAGCCGTCCATGAGAACGTCAATGAGAAAGCACACACCACTAAATTCctgaccactcactcactcatgtgAACACTCGTACAAACAGTTTGGTGCAACTAGAAGtgaaagccaaagaaaacactattctgcacatacagtattttcataaacacattataacatttGAGGTTATTTTGTGAGGTTACATGGGTACCATTAAAAATCATCTAATATCTCAGAAGTTTAACACTACAGTAAATATTTTCACAGACTGTTAGCAAAAAGAATTAAGATTATTAATTCACCACAGCTTTGCGACACTTACTATGCAGTTTTTCAGGGATTAAGCAGAACAATTTTGATGACAGCGTCCATGCATTTACTCATGTTGAAGCATTCCAGGATTGGTCTGAATAGTCATTATAAAAAATGAGAAttcttttgcatatttaaaagttattttaccAGTATTTTTgggctttttgttttatttgtattctttATTTTGCTTGTATGCATTTATGTCTATGTGTACATCACCAAGAATTTGAACCAgact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25200 True 2648 lncRNA 0.35 1 3649331 3651978

Neighbor

gene id symbol gene type direction distance location
fam210b fam210b,LOC102797503,LOC106566122 coding upstream 77 3634096 ~ 3649254 (+)
LOC113545866 LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668 coding upstream 35790 3589067 ~ 3613541 (+)
LOC113545865 NA coding upstream 104796 3540809 ~ 3544535 (+)
sema5bb LOC108271639,LOC108430840 coding upstream 134248 3448150 ~ 3515083 (+)
dync1i2b dync1i2b,LOC108271647,LOC107582325,LOC108438045,LOC107686754,LOC107557143 coding upstream 257762 3377514 ~ 3391569 (+)
aamp aamp,LOC107750832 coding downstream 15298 3667276 ~ 3681466 (+)
nelfcd nelfcd,LOC107685805,LOC107554192,LOC107666106 coding downstream 34643 3686621 ~ 3704908 (+)
gnas gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173 coding downstream 202982 3854960 ~ 3920608 (+)
dzip1 NA coding downstream 317807 3969785 ~ 4005335 (+)
LOC113545970 usp9x,LOC108272755,LOC108412426 coding downstream 408913 4060891 ~ 4110323 (+)
LOC117599318 NA non-coding upstream 266735 3379891 ~ 3382596 (+)
G20868 NA non-coding upstream 295646 3331762 ~ 3353685 (+)
LOC113545973 NA non-coding upstream 430620 3215614 ~ 3218711 (+)
G20856 NA non-coding upstream 438400 3210461 ~ 3210931 (+)
G20848 NA non-coding upstream 496817 3152314 ~ 3152514 (+)
G21138 NA non-coding downstream 1773 3653751 ~ 3653967 (+)
G21168 NA non-coding downstream 14767 3666745 ~ 3666972 (+)
G21178 NA non-coding downstream 30003 3681981 ~ 3682254 (+)
G21197 NA non-coding downstream 61329 3713307 ~ 3714991 (+)
G21203 NA non-coding downstream 79939 3731917 ~ 3733093 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 61688 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 71023 3550225 ~ 3578308 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 282044 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 455870 3182307 ~ 3193461 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 585304 3053331 ~ 3064027 (+)
LOC113545962 NA other downstream 76674 3728652 ~ 3742306 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 623095 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 699699 4351677 ~ 4351748 (+)
spega speg other downstream 1102288 4754266 ~ 4759645 (+)
G21835 NA other downstream 1436156 5088134 ~ 5088578 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G466784 NA non-coding CI01000325 null 8719784 ~ 8720227 (+)
bowfin (Amia calva) G56546 LOC103376870 unknown CM030126.1 CM030126.1 35538887 ~ 35539810 (-)
mexican tetra (Astyanax mexicanus) G52422 NA non-coding NC_035902.1 CM008305.1 15979436 ~ 15979738 (+)