G21138


Basic Information

Item Value
gene id G21138
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3653751 ~ 3653967 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU25202
ttccAGTAatcctatattataaatctggaataaaaaaaatgtaggttgACAAAGGCTTGGggttgcagaaaattcataatgtccattcaGGGTCGTGTACCTATAAGGTTTGGGAACCCCTACCATAGCATGATCCTGGTaccaccctagcaaccacctggaacaCAAccgcaaccacctagcaacacatTAGCAACCAGCTAGAATCCCATAGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25202 True 217 lncRNA 0.49 1 3653751 3653967

Neighbor

gene id symbol gene type direction distance location
fam210b fam210b,LOC102797503,LOC106566122 coding upstream 4497 3634096 ~ 3649254 (+)
LOC113545866 LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668 coding upstream 40210 3589067 ~ 3613541 (+)
LOC113545865 NA coding upstream 109216 3540809 ~ 3544535 (+)
sema5bb LOC108271639,LOC108430840 coding upstream 138668 3448150 ~ 3515083 (+)
dync1i2b dync1i2b,LOC108271647,LOC107582325,LOC108438045,LOC107686754,LOC107557143 coding upstream 262182 3377514 ~ 3391569 (+)
aamp aamp,LOC107750832 coding downstream 13309 3667276 ~ 3681466 (+)
nelfcd nelfcd,LOC107685805,LOC107554192,LOC107666106 coding downstream 32654 3686621 ~ 3704908 (+)
gnas gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173 coding downstream 200993 3854960 ~ 3920608 (+)
dzip1 NA coding downstream 315818 3969785 ~ 4005335 (+)
LOC113545970 usp9x,LOC108272755,LOC108412426 coding downstream 406924 4060891 ~ 4110323 (+)
G21136 NA non-coding upstream 1773 3649331 ~ 3651978 (+)
LOC117599318 NA non-coding upstream 271155 3379891 ~ 3382596 (+)
G20868 NA non-coding upstream 300066 3331762 ~ 3353685 (+)
LOC113545973 NA non-coding upstream 435040 3215614 ~ 3218711 (+)
G20856 NA non-coding upstream 442820 3210461 ~ 3210931 (+)
G21168 NA non-coding downstream 12778 3666745 ~ 3666972 (+)
G21178 NA non-coding downstream 28014 3681981 ~ 3682254 (+)
G21197 NA non-coding downstream 59340 3713307 ~ 3714991 (+)
G21203 NA non-coding downstream 77950 3731917 ~ 3733093 (+)
G21212 NA non-coding downstream 96066 3750033 ~ 3758428 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 66108 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 75443 3550225 ~ 3578308 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 286464 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 460290 3182307 ~ 3193461 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 589724 3053331 ~ 3064027 (+)
LOC113545962 NA other downstream 74685 3728652 ~ 3742306 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 621106 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 697710 4351677 ~ 4351748 (+)
spega speg other downstream 1100299 4754266 ~ 4759645 (+)
G21835 NA other downstream 1434167 5088134 ~ 5088578 (+)

Expression


Co-expression Network