G21178


Basic Information

Item Value
gene id G21178
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3681981 ~ 3682254 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU25247
GAATAatgttcttcatgtcagattaaACAATGAAGGCAGTTACTAAGTTCTGCCATACTGCATGTGCAGCAATGCAGCACAGGTTTGTAGCTCTTCAActggaaagcataaaaataGTTACACGTTgtcataatagtaaataaactctATAAACCGAGTATTTgtgtgctaattagctagctacacacctggaagctgtaattcatcctctATTTCTTTCCATGTCGCATCCCTATTTGTCCTGTCATTATATAAATGTGATGAGACATTATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25247 True 274 lncRNA 0.36 1 3681981 3682254

Neighbor

gene id symbol gene type direction distance location
aamp aamp,LOC107750832 coding upstream 515 3667276 ~ 3681466 (+)
fam210b fam210b,LOC102797503,LOC106566122 coding upstream 32727 3634096 ~ 3649254 (+)
LOC113545866 LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668 coding upstream 68440 3589067 ~ 3613541 (+)
LOC113545865 NA coding upstream 137446 3540809 ~ 3544535 (+)
sema5bb LOC108271639,LOC108430840 coding upstream 166898 3448150 ~ 3515083 (+)
nelfcd nelfcd,LOC107685805,LOC107554192,LOC107666106 coding downstream 4367 3686621 ~ 3704908 (+)
gnas gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173 coding downstream 172706 3854960 ~ 3920608 (+)
dzip1 NA coding downstream 287531 3969785 ~ 4005335 (+)
LOC113545970 usp9x,LOC108272755,LOC108412426 coding downstream 378637 4060891 ~ 4110323 (+)
ddx3xb LOC108272611,LOC108412429,LOC107750829 coding downstream 429920 4112174 ~ 4127858 (+)
G21168 NA non-coding upstream 15009 3666745 ~ 3666972 (+)
G21138 NA non-coding upstream 28014 3653751 ~ 3653967 (+)
G21136 NA non-coding upstream 30003 3649331 ~ 3651978 (+)
LOC117599318 NA non-coding upstream 299385 3379891 ~ 3382596 (+)
G20868 NA non-coding upstream 328296 3331762 ~ 3353685 (+)
G21197 NA non-coding downstream 31053 3713307 ~ 3714991 (+)
G21203 NA non-coding downstream 49663 3731917 ~ 3733093 (+)
G21212 NA non-coding downstream 67779 3750033 ~ 3758428 (+)
LOC113545823 NA non-coding downstream 147335 3829589 ~ 3836969 (+)
LOC113545954 NA non-coding downstream 164359 3846613 ~ 3848899 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 94338 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 103673 3550225 ~ 3578308 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 314694 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 488520 3182307 ~ 3193461 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 617954 3053331 ~ 3064027 (+)
LOC113545962 NA other downstream 46398 3728652 ~ 3742306 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 592819 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 669423 4351677 ~ 4351748 (+)
spega speg other downstream 1072012 4754266 ~ 4759645 (+)
G21835 NA other downstream 1405880 5088134 ~ 5088578 (+)

Expression


Co-expression Network