G21197


Basic Information

Item Value
gene id G21197
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3713307 ~ 3714991 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU25269
AGAAAATTCCTGTTTATCaggaagaaagacagataaaataGAATTGTGTATGGCATCAACATAAAGTGCAAAATTTTAAAGCAGTATTTTAGAATcagcatacagtacatattcCCTTTAACTGATAAACTTGGATAACAAATAGACCATGTCCATTATAAACAGCACAGTTTATAGGGTCAGGAGACTTTTTAATGTAACTGGGCTTAATGGTTGAGCCACTGTGTCCCACAATCTTATAGCAGGGTTGTCCACACTACTAGGTTCCTAGTTTGAACACTGGGTGTCactatatagatagatagatagatagatattaagGTCTTTCAGAATTACACTGAGCCAAATAACTGATGTTTGCAACTACACAAATAACTtccataatgttagctagcaatgTTACATGATTATTTATCTTTGTGTTAACAGCCAGCTTACTAGTAGCTACATGCATGAAGACAAGCATTTGCTAACCTACAACTAGCTCTCCTATCTCAGTTTGGCCTTTTTCGGGCAGGGAGGTTCTTTTCTCTCCGTTTTATACTAAATACGGCCAGAATTGCCTTTTTTCTTAGTATCTTCTTCGGTGGAAAACCCATTAACCCTGTTTTCAAATCTCAGAGAGATTTCTAACCTGCTCTTGAAATAATGCGATTCGCCTAGCAAATGAACTACTTGGTTATAATCTGACCGAAATAGCTattgaaaattttatttaggaaaaggactgacattagctaaaatgttatcagtttattattatggaGTAGCAGTAAAGGGCAGGGCATGTTATTTGGCTAAATGAACACTTTGAAATGTTATAATTCTGTAAAATCCTTAAGGCTTGGCATCCTGTCAGTAGCTAAATAATGCTAAGCTAAATGGTCTAGCCTGCAATGACAGGATATATACACGCACATCTCATAAAAACTATAAGCGTTTATACTAAAGAGAAGTGAATGTTGGTATACTTTGTTGTTTACACTTTGTTTTACAATTATAACATCGGGGATGTTGTTACCCTGAAAGCCAAGTTACTACCACGACTGATACAGAACTATATAGGTTTGTTAAGGCGATATAAACTAGGCATGTTCATTAACTAGCAGGCTGAGTCAGTTCAGTTCTCAGCATCAGTAGTTTACTGATAGGTCACAACTTAGACGAGATGAAATGGGAGCTGCAGAGACAGAGCAGCTTGGACCTGAATTATCCTTCTatactgttttaaaaacaaCCATCTGGAAATATGTCTTAGTCGACAGTATGCCCAACACAACGTCTTGCGCAAGCATTCTAGCcttgcttttaaaaaatcacaaacttCCTGCTATGTTTATACTGCTGTATTTCCTGGAATGCCGTCACATGAGACGTCAGAGATGCAGAGTCACGTGTCTCAAAGGGTCTGATTGCTCAgtctgatggtattcttagtctaTGACCTAATGGACCAGTATCAGGACTAACAGAGACTTTAAAGCATTTCTGTAAGTGGCTCTGGATAAAggagtctgccaaatgctgtaaatgtaaatgtaaatgtcaatcACAGTAGGTACTCCCATTGCTTGAATTACTTGTTGCCATATTGAATTCTGGGTATTGTACCCTTTGggtgaaaacagaaaaactcaaaaaaaaaaaaaaaaaaaaatcaatcaatcatgaATTTTGCTAAACTG

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU25269 True 1685 lncRNA 0.37 1 3713307 3714991

Neighbor

gene id symbol gene type direction distance location
nelfcd nelfcd,LOC107685805,LOC107554192,LOC107666106 coding upstream 8399 3686621 ~ 3704908 (+)
aamp aamp,LOC107750832 coding upstream 31841 3667276 ~ 3681466 (+)
fam210b fam210b,LOC102797503,LOC106566122 coding upstream 64053 3634096 ~ 3649254 (+)
LOC113545866 LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668 coding upstream 99766 3589067 ~ 3613541 (+)
LOC113545865 NA coding upstream 168772 3540809 ~ 3544535 (+)
gnas gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173 coding downstream 139969 3854960 ~ 3920608 (+)
dzip1 NA coding downstream 254794 3969785 ~ 4005335 (+)
LOC113545970 usp9x,LOC108272755,LOC108412426 coding downstream 345900 4060891 ~ 4110323 (+)
ddx3xb LOC108272611,LOC108412429,LOC107750829 coding downstream 397183 4112174 ~ 4127858 (+)
LOC113545870 kdm6a,LOC108272609,LOC108436446,LOC107750839,LOC107564831,LOC107703100,LOC106528445,LOC102291812 coding downstream 420061 4135052 ~ 4244437 (+)
G21178 NA non-coding upstream 31053 3681981 ~ 3682254 (+)
G21168 NA non-coding upstream 46335 3666745 ~ 3666972 (+)
G21138 NA non-coding upstream 59340 3653751 ~ 3653967 (+)
G21136 NA non-coding upstream 61329 3649331 ~ 3651978 (+)
LOC117599318 NA non-coding upstream 330711 3379891 ~ 3382596 (+)
G21203 NA non-coding downstream 16926 3731917 ~ 3733093 (+)
G21212 NA non-coding downstream 35042 3750033 ~ 3758428 (+)
LOC113545823 NA non-coding downstream 114598 3829589 ~ 3836969 (+)
LOC113545954 NA non-coding downstream 131622 3846613 ~ 3848899 (+)
G21249 NA non-coding downstream 143223 3858214 ~ 3860978 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 125664 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 134999 3550225 ~ 3578308 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 346020 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 519846 3182307 ~ 3193461 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 649280 3053331 ~ 3064027 (+)
LOC113545962 NA other downstream 13661 3728652 ~ 3742306 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 560082 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 636686 4351677 ~ 4351748 (+)
spega speg other downstream 1039275 4754266 ~ 4759645 (+)
G21835 NA other downstream 1373143 5088134 ~ 5088578 (+)

Expression


Co-expression Network