G21255


Basic Information

Item Value
gene id G21255
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3934774 ~ 3935373 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU25347
AGTTTAATCCTACACTTTACCTTTCCTTTCTTCTAATGGACTCCCAATAAAGACACAGTGTAAGTGATGTTAACCACAGCAactcaataaaaatgaaaactaaagcATTGTTCGTGATCGATACAATTGTGGACATGAACACCAGTTACACTGAAGTGCTTCGATTCAAAAGCCGTACTGCTGAATACTGAATTAAACCACTTTAGAAATGCCATCTGTGAGAATTCATTTGGTTTATAATTAATCATGCTAGGTTTCATTTTCCCCAGAACTTTTgtttcaaaacaaaattatgtctatcttctatttattattcctacactgaaacactgaactcGGTTCTTCTTCAGTGTGTAATTCAGTAAATTCTGGTATGGTTCATGTGACAGCACCTCCTAGAGGACACACTCATGTTACATGCAAGTATGAATATTTCACCCTGTGCAAGCATCTGTGCACGATGTCCTGACCTGCCCACAGAGATGCGCACACAGATGTATAAATCAACCCTTAATGACAATGTTGCCAAAGTCAtggttttaaaatcatattgagctagtttaaaaatacttgGCGATGGGCGCAAAGATCTTGTttaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25347 True 600 lncRNA 0.37 1 3934774 3935373

Neighbor

gene id symbol gene type direction distance location
gnas gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173 coding upstream 14166 3854960 ~ 3920608 (+)
nelfcd nelfcd,LOC107685805,LOC107554192,LOC107666106 coding upstream 229866 3686621 ~ 3704908 (+)
aamp aamp,LOC107750832 coding upstream 253308 3667276 ~ 3681466 (+)
fam210b fam210b,LOC102797503,LOC106566122 coding upstream 285520 3634096 ~ 3649254 (+)
LOC113545866 LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668 coding upstream 321233 3589067 ~ 3613541 (+)
dzip1 NA coding downstream 34412 3969785 ~ 4005335 (+)
LOC113545970 usp9x,LOC108272755,LOC108412426 coding downstream 125518 4060891 ~ 4110323 (+)
ddx3xb LOC108272611,LOC108412429,LOC107750829 coding downstream 176801 4112174 ~ 4127858 (+)
LOC113545870 kdm6a,LOC108272609,LOC108436446,LOC107750839,LOC107564831,LOC107703100,LOC106528445,LOC102291812 coding downstream 199679 4135052 ~ 4244437 (+)
LOC113545914 NA coding downstream 457133 4392506 ~ 4425544 (+)
G21251 NA non-coding upstream 7607 3921228 ~ 3927167 (+)
G21250 NA non-coding upstream 16152 3915752 ~ 3918622 (+)
G21249 NA non-coding upstream 73796 3858214 ~ 3860978 (+)
LOC113545954 NA non-coding upstream 85875 3846613 ~ 3848899 (+)
LOC113545823 NA non-coding upstream 97805 3829589 ~ 3836969 (+)
G21267 NA non-coding downstream 60127 3995500 ~ 3995788 (+)
G21269 NA non-coding downstream 77002 4012375 ~ 4012680 (+)
G21271 NA non-coding downstream 78297 4013670 ~ 4013897 (+)
G21281 NA non-coding downstream 175827 4111200 ~ 4111704 (+)
G21293 NA non-coding downstream 220627 4156000 ~ 4156320 (+)
LOC113545962 NA other upstream 192468 3728652 ~ 3742306 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 347131 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 356466 3550225 ~ 3578308 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 567487 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 741313 3182307 ~ 3193461 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 339700 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 416304 4351677 ~ 4351748 (+)
spega speg other downstream 818893 4754266 ~ 4759645 (+)
G21835 NA other downstream 1152761 5088134 ~ 5088578 (+)
G21901 NA other downstream 1272973 5208346 ~ 5208864 (+)

Expression


Co-expression Network