G21269


Basic Information

Item Value
gene id G21269
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4012375 ~ 4012680 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU25363
AAATCTTCTAGTGCAGTCAGTCCTTAAATGGAAGGAGGTGATAAGAGGAAAATTCAGTCCAAATTTAACAagtaaggacaaaaaaaaatgcatggcaACACAttgcagtgagtgtaaatgCAGCATTTTCTCAGACAAGACGTTCAGCAGAGGATTGTGAGAAAAGGTGGTACAATGTTTTGGCAACGGCACGCAAGGAAATTGCAGCATAGAAAGAAAGCATGAGAGCCACtggtacattttatttcagcctTATTATACCCTTTTTTGTGTGGCTTGTGGCATTTTGCGCAATATTTGCAAAGC

Function

NR:

description
PREDICTED: ATP-citrate synthase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25363 True 306 lncRNA 0.30 1 4012375 4012680

Neighbor

gene id symbol gene type direction distance location
dzip1 NA coding upstream 7040 3969785 ~ 4005335 (+)
gnas gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173 coding upstream 91767 3854960 ~ 3920608 (+)
nelfcd nelfcd,LOC107685805,LOC107554192,LOC107666106 coding upstream 307467 3686621 ~ 3704908 (+)
aamp aamp,LOC107750832 coding upstream 330909 3667276 ~ 3681466 (+)
fam210b fam210b,LOC102797503,LOC106566122 coding upstream 363121 3634096 ~ 3649254 (+)
LOC113545970 usp9x,LOC108272755,LOC108412426 coding downstream 48211 4060891 ~ 4110323 (+)
ddx3xb LOC108272611,LOC108412429,LOC107750829 coding downstream 99494 4112174 ~ 4127858 (+)
LOC113545870 kdm6a,LOC108272609,LOC108436446,LOC107750839,LOC107564831,LOC107703100,LOC106528445,LOC102291812 coding downstream 122372 4135052 ~ 4244437 (+)
LOC113545914 NA coding downstream 379826 4392506 ~ 4425544 (+)
LOC117599286 rabl3 coding downstream 430131 4442811 ~ 4443641 (+)
G21267 NA non-coding upstream 16587 3995500 ~ 3995788 (+)
G21255 NA non-coding upstream 77002 3934774 ~ 3935373 (+)
G21251 NA non-coding upstream 85208 3921228 ~ 3927167 (+)
G21250 NA non-coding upstream 93753 3915752 ~ 3918622 (+)
G21249 NA non-coding upstream 151397 3858214 ~ 3860978 (+)
G21271 NA non-coding downstream 990 4013670 ~ 4013897 (+)
G21281 NA non-coding downstream 98520 4111200 ~ 4111704 (+)
G21293 NA non-coding downstream 143320 4156000 ~ 4156320 (+)
G21297 NA non-coding downstream 189876 4202556 ~ 4204963 (+)
G21469 NA non-coding downstream 323574 4336254 ~ 4336636 (+)
LOC113545962 NA other upstream 270069 3728652 ~ 3742306 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 424732 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 434067 3550225 ~ 3578308 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 645088 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 818914 3182307 ~ 3193461 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 262393 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 338997 4351677 ~ 4351748 (+)
spega speg other downstream 741586 4754266 ~ 4759645 (+)
G21835 NA other downstream 1075454 5088134 ~ 5088578 (+)
G21901 NA other downstream 1195666 5208346 ~ 5208864 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000037_02878351_02882111 NA coding CI01000037 null 2878325 ~ 2882119 (-)