G21281


Basic Information

Item Value
gene id G21281
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4111200 ~ 4111704 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU25377
CATTTTGTGAAAGATGCATGGATAATATTCCTTGATTTGCCTTAGAGGACTGTAAAAACCCAGCACACtgtaaaattactttaaaaaataataataaaaaaagttatttaaatgtttagtcTGTGCaatgtgttatataaaatatggcTTTTGACAAAACTAGTcatatgatatactgtatattatgatattaataGTGAACTAAATATCAGTTTTTGCATTGTCTGAATTTACTATAAATGTTCTTTAAGAACTCGTATATCGATCTGTTGAACTCTATAATGgcacataacttttttttttcagatcttCTGCTCAGCTTTTGGATCTTCACTTCCAGTATCTGACCCCCTGTAGCCCTTAGACACATTCTTACTGACATCTGTTCAAACTGTGCCAGGTGTTATACACTCACTTCTTACAATGAAGTCTGAAGGAAGTCAGGGCaaaagtttaataaacacaaaataaactgCTTTATGCTTTGAATTATTTTGTTGCCgga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25377 True 505 lncRNA 0.31 1 4111200 4111704

Neighbor

gene id symbol gene type direction distance location
LOC113545970 usp9x,LOC108272755,LOC108412426 coding upstream 877 4060891 ~ 4110323 (+)
dzip1 NA coding upstream 105865 3969785 ~ 4005335 (+)
gnas gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173 coding upstream 190592 3854960 ~ 3920608 (+)
nelfcd nelfcd,LOC107685805,LOC107554192,LOC107666106 coding upstream 406292 3686621 ~ 3704908 (+)
aamp aamp,LOC107750832 coding upstream 429734 3667276 ~ 3681466 (+)
ddx3xb LOC108272611,LOC108412429,LOC107750829 coding downstream 470 4112174 ~ 4127858 (+)
LOC113545870 kdm6a,LOC108272609,LOC108436446,LOC107750839,LOC107564831,LOC107703100,LOC106528445,LOC102291812 coding downstream 23348 4135052 ~ 4244437 (+)
LOC113545914 NA coding downstream 280802 4392506 ~ 4425544 (+)
LOC117599286 rabl3 coding downstream 331107 4442811 ~ 4443641 (+)
igfbp5a LOC108273291 coding downstream 455030 4566734 ~ 4587196 (+)
G21271 NA non-coding upstream 97303 4013670 ~ 4013897 (+)
G21269 NA non-coding upstream 98520 4012375 ~ 4012680 (+)
G21267 NA non-coding upstream 115412 3995500 ~ 3995788 (+)
G21255 NA non-coding upstream 175827 3934774 ~ 3935373 (+)
G21251 NA non-coding upstream 184033 3921228 ~ 3927167 (+)
G21293 NA non-coding downstream 44296 4156000 ~ 4156320 (+)
G21297 NA non-coding downstream 90852 4202556 ~ 4204963 (+)
G21469 NA non-coding downstream 224550 4336254 ~ 4336636 (+)
G21475 NA non-coding downstream 229423 4341127 ~ 4341340 (+)
LOC113545955 NA non-coding downstream 317703 4429407 ~ 4434736 (+)
LOC113545962 NA other upstream 368894 3728652 ~ 3742306 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 523557 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 532892 3550225 ~ 3578308 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 743913 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 917739 3182307 ~ 3193461 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 163369 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 239973 4351677 ~ 4351748 (+)
spega speg other downstream 642562 4754266 ~ 4759645 (+)
G21835 NA other downstream 976430 5088134 ~ 5088578 (+)
G21901 NA other downstream 1096642 5208346 ~ 5208864 (+)

Expression


Co-expression Network