G21293


Basic Information

Item Value
gene id G21293
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4156000 ~ 4156320 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU25391
TATGGTGCTAGTTAACTCTTAGTGGAGCCGCAGAATTCATTACGCCAGTACTGATGGAATTGAATAACATAAGATGCTCATCGATATTAAACAGATTTGAAAGAGAATCAATACTGTAAGTTTGACAAGCCTCCTTGAACAAAGCAGAGAAATCAGCATTAGAAGATGGACTAAAGGTACAAATCTGCTGTGAAACCGTCGTAGTTTTTGAAACTTTATTCGAAAAAGAGCAGGTGAATGTAACAGGCATATGATCAGGAAAAACTCAGATCAAAAATTTCGAGTTCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25391 True 289 lncRNA 0.37 2 4156000 4156320

Neighbor

gene id symbol gene type direction distance location
ddx3xb LOC108272611,LOC108412429,LOC107750829 coding upstream 28142 4112174 ~ 4127858 (+)
LOC113545970 usp9x,LOC108272755,LOC108412426 coding upstream 45677 4060891 ~ 4110323 (+)
dzip1 NA coding upstream 150665 3969785 ~ 4005335 (+)
gnas gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173 coding upstream 235392 3854960 ~ 3920608 (+)
nelfcd nelfcd,LOC107685805,LOC107554192,LOC107666106 coding upstream 451092 3686621 ~ 3704908 (+)
LOC113545914 NA coding downstream 236186 4392506 ~ 4425544 (+)
LOC117599286 rabl3 coding downstream 286491 4442811 ~ 4443641 (+)
igfbp5a LOC108273291 coding downstream 410414 4566734 ~ 4587196 (+)
stk11ip stk11ip,LOC107663072 coding downstream 494686 4651006 ~ 4692028 (+)
LOC113545978 NA coding downstream 503689 4660009 ~ 4660123 (+)
G21281 NA non-coding upstream 44296 4111200 ~ 4111704 (+)
G21271 NA non-coding upstream 142103 4013670 ~ 4013897 (+)
G21269 NA non-coding upstream 143320 4012375 ~ 4012680 (+)
G21267 NA non-coding upstream 160212 3995500 ~ 3995788 (+)
G21255 NA non-coding upstream 220627 3934774 ~ 3935373 (+)
G21297 NA non-coding downstream 46236 4202556 ~ 4204963 (+)
G21469 NA non-coding downstream 179934 4336254 ~ 4336636 (+)
G21475 NA non-coding downstream 184807 4341127 ~ 4341340 (+)
LOC113545955 NA non-coding downstream 273087 4429407 ~ 4434736 (+)
G21514 NA non-coding downstream 300952 4457272 ~ 4457846 (+)
LOC113545962 NA other upstream 413694 3728652 ~ 3742306 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 568357 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 577692 3550225 ~ 3578308 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 788713 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 962539 3182307 ~ 3193461 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 118753 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 195357 4351677 ~ 4351748 (+)
spega speg other downstream 597946 4754266 ~ 4759645 (+)
G21835 NA other downstream 931814 5088134 ~ 5088578 (+)
G21901 NA other downstream 1052026 5208346 ~ 5208864 (+)

Expression


Co-expression Network