G21297


Basic Information

Item Value
gene id G21297
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4202556 ~ 4204963 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU25395
aaaaaacaaaaaaaaaacctgacaatAGTCAccagttaatatttttaactcAAGTCCACGGTAATGTTTTACAAGCAACATTACTGTATTATAGGGCACTGTTCACTTTGTTGGTGAAGGTTGGTCCTGGTCATATACTTCACTATAACCACACTGTGTGCAGAAAGTGAGAGCGTGCGAAAATTAGGAGCTCCTCTGACAGACTAGCTATACCATGAACTTGCACAAGTTGACTACTAATGCAGCAGGTTGTCAGCTTCTTTACAGTTGGATGTTATTACCTAGCAGTCATAGTCTTAGGATTGACATACAAGAATAAATAGGAAAGAAGTTCTTCTCTCATTAGTAGTTAATTCCACTTTTCTGctatgtctctctcactcttattCTTTTGCTTGCACGCCCTGGACCTGTTCACAATTAGCATCCATCTGGGCTAGTCTGAAAACATGTGGATGGTGCTAAATATACATTTGCCAGCCACTAttataggaacacctgtacccctgttCATTCATGAATTATCATGTGGCAGTGGAgcagtgcaaaaaaatcatgcagatacaggtcaagagcttcagttaatgtttacattaaacatcagaatggagaaaaatgtgatctctgtgactttgaccgatggatgttggtgtcagatgggctggtttgagttctTCTGAAACTGCTCATTTTCTGGGAATTTTGCACACAAccgtctctagagtttacgcagaatggtgcgtaaaacagaaaacatcctgtgagcagtaGTTCTGCGAGTGGAAACGCTTTGTTGatgtgagaggtcagaggagaatggccagaatggttcatgctgacaggaagactaagGACAGGAAGGCTAATAACCACAATTTACAACCttgatgagcagaaaaacatcttaaTCAGACAATGTACAACttgtcagacaagaacaggaatcgGAGTCTACAGTTGGCACAGGATCacctaaactggacagttgaagactgagAAAAGACCAGGTATGAAGGCgtttctattaaagtgaccGGTGAGTGTAGGTTAAAATATGATCAGATGTGTTTCTTGAACTAATCACTTATGGAAGTGGGATGGAATGCCTCTTTCCTCGTTACATTTGAGGTGTTAATGGCAGTGCATCCTGATTCATCTCTTACAACATTAAAAGACCACCTGGTCACCATTGTTGCAAGTTTCCCATTTCTCCATGGAAATGAGCTACTTCTCAACTGTTTACCTGGTTAATTTTGTGTTGTCCATGGCTTGGACGTtttgaatatattatattaattaaatctcTATAGAACATAACAAAAGAATATATGTGCAGGAAGTGCTTCCGCTGTTTCTGGAATATATCTGGTTGGTGGTAAACATCAGTATCGAAGAACCATGTGACTGGTAATTTACTTTAATGACAATGTCCATATTAAAACTTGGACATTTTGTTCTGTTGTTGGATGTTCTCTCAGGCCTGGAACAAACTTGCTCAGGAATTAAAATGTATCGATTTTTAAAAGACGAGCCACAGTGAAATATTTGGATTGCAGCAGTTAAGAGAGAGACGGCTGGATACTTGCTAGCAACTCTAGACTCTGTGGCACGCATTTCATCTCAACttatatgaaatattacatACTTATGGAATCATGTAATATTGCATACTTGTTGGATGACAGGAGTCACAACAAACCAcatcagacattttaaataagatGTCAGTACGAGCTGCATGGTGCATCCTAAACAGGTGAATGCTCAGCAGTGCATTCAATTGACAAACAAGAAAACTAACCAACTGGCTCACACAGCCATACGCATACAGCATCCACTCCCAGCTTCCCCTTCCTTCTTATCAGTGAACCATGCTGAGTACATTTTAGACAGAGTTTGACTGCTCCAACTTCCATACACAATACAGATGCCATCCACATTTCTACTAAGAAAGTAATCGTAAGTGTTCAAACGATGAGCTTTCCGATGATACAAACACACTGCCTGTCAACAAGCTACAGATAGAGATCAACGATAAGTCACTTCAGATAAAAGTCGgcagaagaaaaggaaaactaGTTTTCTCAAATACTTGTAAATTCTTctattatttgttgtttttcaaaGTGTTGATCTATCATTTGTTGTCAATTTTTTTATCGTTTGTTTGGTTCTTGGGAGGCTCAAGAAGTACGTGTTAAACTTCTGCTTAGTAACGTTGTTTTTCTTACCTCATTGAAACCGTCTGTATTGAAACGTGCATATTGGCTCCCGAGTGGCACAACACGTAGAGCTGGGTTTGTGGCaggactgatttatttatttaaaatctttgaGCTCTATGTGTAGTGACTAAATTTGTCTAGGCAACTCGCATTCTATTTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25395 True 2387 lncRNA 0.39 2 4202556 4204963

Neighbor

gene id symbol gene type direction distance location
ddx3xb LOC108272611,LOC108412429,LOC107750829 coding upstream 74698 4112174 ~ 4127858 (+)
LOC113545970 usp9x,LOC108272755,LOC108412426 coding upstream 92233 4060891 ~ 4110323 (+)
dzip1 NA coding upstream 197221 3969785 ~ 4005335 (+)
gnas gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173 coding upstream 281948 3854960 ~ 3920608 (+)
nelfcd nelfcd,LOC107685805,LOC107554192,LOC107666106 coding upstream 497648 3686621 ~ 3704908 (+)
LOC113545914 NA coding downstream 187543 4392506 ~ 4425544 (+)
LOC117599286 rabl3 coding downstream 237848 4442811 ~ 4443641 (+)
igfbp5a LOC108273291 coding downstream 361771 4566734 ~ 4587196 (+)
stk11ip stk11ip,LOC107663072 coding downstream 446043 4651006 ~ 4692028 (+)
LOC113545978 NA coding downstream 455046 4660009 ~ 4660123 (+)
G21293 NA non-coding upstream 46236 4156000 ~ 4156320 (+)
G21281 NA non-coding upstream 90852 4111200 ~ 4111704 (+)
G21271 NA non-coding upstream 188659 4013670 ~ 4013897 (+)
G21269 NA non-coding upstream 189876 4012375 ~ 4012680 (+)
G21267 NA non-coding upstream 206768 3995500 ~ 3995788 (+)
G21469 NA non-coding downstream 131291 4336254 ~ 4336636 (+)
G21475 NA non-coding downstream 136164 4341127 ~ 4341340 (+)
LOC113545955 NA non-coding downstream 224444 4429407 ~ 4434736 (+)
G21514 NA non-coding downstream 252309 4457272 ~ 4457846 (+)
G21577 NA non-coding downstream 320960 4525923 ~ 4526332 (+)
LOC113545962 NA other upstream 460250 3728652 ~ 3742306 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 614913 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 624248 3550225 ~ 3578308 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 835269 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 1009095 3182307 ~ 3193461 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 70110 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 146714 4351677 ~ 4351748 (+)
spega speg other downstream 549303 4754266 ~ 4759645 (+)
G21835 NA other downstream 883171 5088134 ~ 5088578 (+)
G21901 NA other downstream 1003383 5208346 ~ 5208864 (+)

Expression


Co-expression Network