G21333 (ddx3x,LOC108272611,LOC103389314,LOC100708206,LOC101487926)


Basic Information

Item Value
gene id G21333
gene name ddx3x,LOC108272611,LOC103389314,LOC100708206,LOC101487926
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4122995 ~ 4127844 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU25441
TCTaactttattttcttaaaatcatAAAGAACATACAGTGCACAATGTTTAAACTAGTACACAAAGCAAATTTTCACTCTACGGGctccactgatttttttttttgttgttgttatgagTTGGTGAATAAAAACCTTATTTCCTGTCcagtgcactttatttaaactcAACTGCTTTGTAATTAAGACTAATTTAGCACCAAAACAGAGAACAAGGTTTCCAAATGCCAAATTTCTGCAAATGCAACAGAAGGACCACATGTTTTTCCTTAAGATTGCCATCAGCCAGACACTCACTGGGGGCAAAATTAAATCacttctttaaaaaacacaaaagaaaaacaaaaaaaaaataaaccaaaaacaaacccTGGGTTAATCTGCACTGatataattacaaaattatttttacctGTTGTCCAAACCTTGGCATGGTGTTTAGTTTTGGCTGCCAATTCATTTCTTTGATAGGAGGAATATTTGGCCAGAAGTCTATAAGTGAGGATTTTGACTTATTTCAAAATGAccttaaacattaaaaagcTCACACTACCCCGAAAAATAGAAGTTTCACGCATACAGGTGGCATTCAACATTCAAGTACCAGTGTTTTTGTACGGTCTTTTGGTCAAGTTAACATGAAACGATCACTTTTaggtttataaaaataaatatttctcaaaaatgcttaataaattacacaaactAGCAGCAAAAAGTAGAATCTAGTAATGTGTGCGCAAGTAGCTAAATTTCCCCATTGCCGATTCCCTGGTCCCAAATTAATCCTGGCTAAATATTGAGAACCCTTCCGTTTTGtaaacaagctgcattttttttttacagtctttACACAGAATATTGGAAGCTTAAGGACACACACTGAAGACTTTTATATAAAACTCTTGATGTGCAATAAAATAACGTTTTGTAAAACTTGATGGGCATAACATACAAGGGCCTACACCTAAATAGCACCACTTGTCTCAAGTTACCACAATACTGGTCAAGTGCATCCACTTCAGTTCACCATTTTCACctaaacttttttaaatgtcaaaagGCACAACATGCTTGAGGAAATCTATTGCACTTCAGTAAAATGTAGTATCACGTCCCCCCCCCTCCTTCACACCTCAACTCCTTAAAGGGAGAGGAAGTCACTGCCAGTTGCAATGAGTGATTGATGATCACGTCTCCACACTATCACCGAGGTCCTCAATTAACCTGAGGGTGGGAAGGAGAACTGCAACCATTACTTTGGCCAAGACACCAAGGAAACACCAGCTACtacaaaagaaaagtgtattagTCAAGACTCCAATGCCACTAGACTTTGCTTCCCCCTGTACAATTCCTCTTCCTGTGTACATTATTCCTGATTTCCCTCCCCCACATCCTTCAGAGGTCTTACAGGGAAGCCGTGTCTCTAGACCACAGATGGCTGAAATTCTGGGCCACTTGGGAAAAAGGTGGAAATGAAAATCTCCATGATATTCTTTGTTGCAAAAAGGAAAGCCTGCTTCAGAAAATTTTGTCGGACTATCTCcttgaccaaaaaaaacaagaacactTGCCATGCGAATTGCTGCAGAGATGGGCCTGGCATTTAGGGCCTGTCCACTCTGACACCGGTCCGAATATAGCAACTTGAACTTTTCACTGACGCAGTAGCTCATAGTCCACTGGTTTGTCCATTTCAAAAAGTATTTAgtaaaaagtataaaacacaTAATTGCCACTCCACAAAAGTTCAAGTAAGGAACAGACTGAAGAGACTGCACACCTCCAAACAGCTAGACTGTTTCTGAACTAGCTGCCTGAAAATGTTCTGATTCACATAAGAGCATACAAATGTTGTGCATCCAAACACTGGGGGTGAATGGAGGTACAAACTGCTCACTTCATGGTTACGGATATTAAATTGGAATGGCTTGCTAAATCTTTTTCAGATGACTACCACGTCCCTTAGAGATACCTCTCCAGGATAGAGTGAGCAAGATTAACATTTTCATTAAGATCTTCCTTCCCTTGCGAGGCAAGGGGAGAAACCAATGTAAGTAGGGACAGGTACATTTTTGAAATGAGCCTGGTGACCCTGTGATCAATTTGATGTTCAGAACAAGGTTTTGACTCCAGAGCCAAACCTTCCTTGAGTTTGCCAAGGTTTGATTAATCTTAATTTGTGCCTTCAAACACCAAAATTTTTTGAAGAACTTAAacttaaacacaaaGATGTTTAAAAagtaacaagacaaaaaagtcCAAATTTAAAGGCACAGTACACTGACAAACAAATGATTCTCCTTTACTACAAAGAAAGCAATGTGATGtagtggaataaaaaaaaaataataataataagagccAAAACAAGTAACATTTccacttttcttcctttttgtctttctaCAGACAAGCAAGTCTGGAGACAGGTTCCTCCTGTGGCCAATGTCTCCCATCTCCTAGAGCCAGTGATGCAGTATTCCAGGATGTGGTCAGAGAATCACAGGTGTTAATGTACTGTAGAGTTCTTGAATGCTACACAGGGTTTATAGCCTGGCTTAATTACATGTGGTTTCCATTCAGTGAGTTTGGTGTGGCGGCCCACTGATCATGGGGAGTGGAAAGGTGCGTGTGTGGTTAACAAGTTAGTTTCCCCACCAGTCCACCTGAGAGTAGTTTCCACCATAACCATCACTGTTGTAGAAATTTCCAAATCCCCTTAGCACCACCAAATCCGCGGTTGCCACCATGGCCACCAGCATTACGACTGCCACGACTCCCAAAGCCTCCGTTAGTGGTGTTGCTGCTGGTTTGACGGTAATCTCTGGCTCCAAAGCCCCCAGAGAACCTCTTTGCGCGGCCACGGTTGCTACCCTTGTGCTGATGCTCATAAGCCAAGCTTTCCAGCCAGGATggcacttcctgtttggccTCCACCAGGATGTCCAGGAGGTCTTTTGTAATGTTGCCATTCTTGTCGTTAAAGAATGAGGTGGCAAGACCAAGATTTCCCACACGACCCGTACGGCCTATGCGATGAACATACTCCTCAATGTCACTGGGCAGGTCGAAGTTGATGACATGTTTCACATTGCAGATGTCTAGACCACGTGCAGCTACCTGCGTGACAAAGAAAATGGCTCAGAAGtagaaaatacaataatatacttTCACTCTATGataaggaaaataaatgcaaataaagtaAAAGGAAAAAGCATACAGCAGTGGCAACCAGGATTGGGCATCTTCCAGAGCGGAACTGATGGAGTGCCTCCTCACGGTCTCTCTGTGAACGGTCACCATGGATACTGGTGCAGGCATAGCCTTCACGGTACAGAAAGTCCTCGAGCGCATCAGCACCCTTCTTGGTTTCCACAAACACCAGAGTCAGAGAGTCTTTGCCTGTTTCTCACTGTTTTCTCCAGTATTGTCCTGAACCTCGCCTGGTATGACTTTGGATAAAACCAGATCTCACGATAAGCTTTATGCATTCCTACGACCCTGAACAGTTTTTCGATTTACACTATAGATGATTAAACGCTTGGGAAAATAGAGAAAGACATAATACTCCTTAGTTTCTTcaatttaaactatttaaagaCTGTAGCATTGCTGAATTTTGTACATATCATTACAATAGGGAGCTGACGTAAGGAGCTGTTCTAATCTCAGTGACCTGTTAACTTCATTATATAAAAGACAGTTATATAGTTAGAAATACTTCAATTACCTGTGGCATTCAGAAGGTCAAGCAAGAAGGATCTTTTATCACTCTCCTCAACCCAAACCACTTTCTGGGTAATGTTCTCAGAGGTAGAGCCCACACGGCCCACAGCCAAGAAGATGTAATCTTCCAGGAAGTCACGTGC

Function

symbol description
ddx3x Enables several functions, including helicase activity; nucleic acid binding activity; and nucleoside-triphosphatase activity. Involved in several processes, including positive regulation of type I interferon production; regulation of cellular protein metabolic process; and regulation of signal transduction. Located in several cellular components, including cell leading edge; centrosome; and cytoplasmic stress granule. Colocalizes with cytosolic small ribosomal subunit and eukaryotic translation initiation factor 3 complex. Implicated in syndromic X-linked intellectual disability.

NR:

description
PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25441 True 3877 lncRNA 0.41 6 4122995 4127844

Neighbor

gene id symbol gene type direction distance location
cldn10a cldn10a,LOC108272592,LOC108436398,LOC107551926,LOC107581434,LOC107659956,LOC107706622 coding downstream 83711 4034071 ~ 4039284 (-)
si:busm1-52i16.2 LOC108272376 coding downstream 97017 4023790 ~ 4025978 (-)
si:ch211-181l5.2 LOC108273231 coding downstream 114418 4004622 ~ 4008577 (-)
stx16 stx16,LOC107708146,LOC107685804,LOC107554194 coding downstream 164176 3938000 ~ 3958819 (-)
tubb1 tubb1,LOC107685846,LOC107554186,LOC107666034,LOC107729746 coding downstream 277271 3839963 ~ 3845724 (-)
prelid3b prelid3b,LOC107749404,LOC107556737,LOC103464385 coding upstream 231276 4359120 ~ 4365171 (-)
LOC117596284 NA coding upstream 319523 4447367 ~ 4447479 (-)
LOC117596286 NA coding upstream 330492 4458336 ~ 4458447 (-)
LOC113545959 NA coding upstream 348008 4475852 ~ 4483914 (-)
igfbp2a LOC108273244,LOC108438161 coding upstream 462540 4590384 ~ 4618467 (-)
G21341 NA non-coding downstream 11341 4111282 ~ 4111654 (-)
G21400 LOC108272755 non-coding downstream 45168 4077128 ~ 4077827 (-)
LOC113545971 NA non-coding downstream 60586 4044564 ~ 4062409 (-)
G21382 NA non-coding downstream 113655 4009131 ~ 4009340 (-)
G21377 NA non-coding downstream 123359 3993879 ~ 3999636 (-)
G21417 NA non-coding upstream 18892 4146736 ~ 4153896 (-)
G21413 NA non-coding upstream 41158 4169002 ~ 4244436 (-)
G21422 NA non-coding upstream 64159 4192003 ~ 4232095 (-)
LOC113545816 NA non-coding upstream 117913 4245757 ~ 4255362 (-)
G21441 NA non-coding upstream 143965 4271809 ~ 4272029 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other downstream 345007 3750018 ~ 3777988 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other downstream 386109 3715807 ~ 3736886 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other downstream 751841 3348308 ~ 3371154 (-)
LOC113545802 NA other downstream 1489315 2604654 ~ 2633680 (-)
slc9a7 slc9a7,LOC107711095,LOC107673530,LOC107753405 other downstream 2300327 1756160 ~ 1822668 (-)
G21434 NA other upstream 128824 4256668 ~ 4257087 (-)
trnaf-gaa_14 NA other upstream 204255 4332099 ~ 4332171 (-)
obsl1a obsl1 other upstream 685431 4813275 ~ 4902011 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other upstream 983618 5111462 ~ 5201212 (-)
LOC113533127 NA other upstream 1278123 5405967 ~ 5414086 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033281 NA non-coding NC_007117.7 CM002890.2 59835630 ~ 59853683 (-)
grasscarp (Ctenopharyngodon idella) G497350 NA non-coding CI01000340 null 19448439 ~ 19451285 (-)