G21400 (LOC108272755)


Basic Information

Item Value
gene id G21400
gene name LOC108272755
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4077128 ~ 4077827 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU25521
GGTTGATCATATCGTCCAGCTTGGCCAGGTCTGTGTGGGGGAATGCtggctcctcctcttcctgtgcCTGCTGAGCATCACCCTGcccctgtccctgtccctccAGAGGGCTCACTGGAGATGTCTCATTAGAAGAGTTGGGAGAAGGtgtctggttCTGGGGTAGAGGGGCTTGACTCTGGCCATCCGGGGCTTGGCTCTGGCCATCCGGGGGTTGGCTTTGTCCCTGGTTGTCACTGTTCCCCATGGGGGAGCCCCGGGTGGTGGCTGTCATGCTGGGCACGGGGCAGATCTTTGCAATCTTGTCTGCTTATGTAGCAGGAGCAAGAGAAATCACTGCCTGGAGGGCAGTACTATGGAACCAGAAGCtgaaagaggaggagagcagCACCTGGAGCTTCGGCTGAGTTGCAGTGACCATTGCATAA

Function

NR:

description
PREDICTED: probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25521 True 428 lncRNA 0.58 2 4077128 4077827

Neighbor

gene id symbol gene type direction distance location
cldn10a cldn10a,LOC108272592,LOC108436398,LOC107551926,LOC107581434,LOC107659956,LOC107706622 coding downstream 37844 4034071 ~ 4039284 (-)
si:busm1-52i16.2 LOC108272376 coding downstream 51150 4023790 ~ 4025978 (-)
si:ch211-181l5.2 LOC108273231 coding downstream 68551 4004622 ~ 4008577 (-)
stx16 stx16,LOC107708146,LOC107685804,LOC107554194 coding downstream 118309 3938000 ~ 3958819 (-)
tubb1 tubb1,LOC107685846,LOC107554186,LOC107666034,LOC107729746 coding downstream 231404 3839963 ~ 3845724 (-)
prelid3b prelid3b,LOC107749404,LOC107556737,LOC103464385 coding upstream 281293 4359120 ~ 4365171 (-)
LOC117596284 NA coding upstream 369540 4447367 ~ 4447479 (-)
LOC117596286 NA coding upstream 380509 4458336 ~ 4458447 (-)
LOC113545959 NA coding upstream 398025 4475852 ~ 4483914 (-)
igfbp2a LOC108273244,LOC108438161 coding upstream 512557 4590384 ~ 4618467 (-)
LOC113545971 NA non-coding downstream 14719 4044564 ~ 4062409 (-)
G21382 NA non-coding downstream 67788 4009131 ~ 4009340 (-)
G21377 NA non-coding downstream 77492 3993879 ~ 3999636 (-)
G21358 NA non-coding downstream 144560 3932136 ~ 3932568 (-)
G21306 NA non-coding downstream 291574 3785140 ~ 3785554 (-)
G21341 NA non-coding upstream 33455 4111282 ~ 4111654 (-)
G21333 ddx3x,LOC108272611,LOC103389314,LOC100708206,LOC101487926 non-coding upstream 45168 4122995 ~ 4127844 (-)
G21417 NA non-coding upstream 68909 4146736 ~ 4153896 (-)
G21413 NA non-coding upstream 91175 4169002 ~ 4244436 (-)
G21422 NA non-coding upstream 114176 4192003 ~ 4232095 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other downstream 299140 3750018 ~ 3777988 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other downstream 340242 3715807 ~ 3736886 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other downstream 705974 3348308 ~ 3371154 (-)
LOC113545802 NA other downstream 1443448 2604654 ~ 2633680 (-)
slc9a7 slc9a7,LOC107711095,LOC107673530,LOC107753405 other downstream 2254460 1756160 ~ 1822668 (-)
G21434 NA other upstream 178841 4256668 ~ 4257087 (-)
trnaf-gaa_14 NA other upstream 254272 4332099 ~ 4332171 (-)
obsl1a obsl1 other upstream 735448 4813275 ~ 4902011 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other upstream 1033635 5111462 ~ 5201212 (-)
LOC113533127 NA other upstream 1328140 5405967 ~ 5414086 (-)

Expression


Co-expression Network