LOC113545816


Basic Information

Item Value
gene id LOC113545816
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4245757 ~ 4255362 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU25540
GTGCTGGATTCTGCCCAGAACCTTTAAAGATTCATCTGAAGGGACGAACCACCTCTGAGCTCTGAGGAAGCTGATAATCAGTGTGTGATATGCATCTCTACTGTACTAAACACCCTGAGAAACTCAGAAAGACAGTTCCAGTGGAGTGGGTGTAGCCTAAATCGCTTATTTAAAGCACAGCCCAGTGAATTTATGCTGATAGAAAtggggtggagagagagagctgtcaGCTGCGAACATCTTAATCAAACCTCCGACTACATTCCTCGGTTCTGAAGGCACAAACCTTAAACAGATTCGGTTCATTTACAGGCGACCCTCTGCCTCTAACCTGAGGTCAGCACTGgtgtaatgtaaacaatgcGAGACGAGGTAGTTCAGGCACGGCCCCGAAATGCAGCTGGAATCTGGAAGCGTGAACAAGCAAGCAGCCGACATTGCAGACTGACACATCGGGGTGCGCGCGAGAGCAGCGCGAGAGCAGCGCGAGCTCCACACGGCTGATAAAGCGGGACCGAGAGGGCGGCAGATGGCCAGCGCGAGGGGATGAGATCACTCACAGAACGAAGCAGAAGTGAAGCGAGGAGAGAGAGCTCGGAACTGTTAGCGCACAACCGGGGACGAGGCTGGGACTCCGGACACGCAGGGAAGAAATTCAGTTTGGAGACATGGCCTTTTCCTCCTCAATGAATGACCTTCTCCTCACCCAGccattcagaaaaaaagtgaCAGTAAAAGACAGCTCCCGGGATAGGACAGATCAAAATGAAGACCCGCCCCTCCACCCTTACTGCTCCCGCCTCTCTTTTAAAAGGTCCACCTGGCAGCATGTGACCCAATTACAGCACGGGAGATAAAAAGGGCACAGTGTACAGTGAAAATTCTGAACCAGCCACACAGAGACTGAAAAAGTGTTATGGGAAATAATGAATAGGAGAAAGTATTTCAAGAAAGACTGACAGATTTCTTGAGACAGTTCCACATAATTGTCACCTGTTCTCAAGGTGATGGGTAAATTCCTGCGCTCTTTAAGAAACTGAGACTGTGGAAGTGAGGTCGCTGGAATCACAGGGAGAAGAGAAATCAGACAGAtgtgtgtgtgtgtgtgtgttggtgggggAACAGCTTCTGTAAAAGGAGAAATtgaagagaggaagacagaggcAGGACGGCTTCCTCTACACATCCTCATCACTGATGCCATTTCATCTCTACTTTCCTTCATGCATAAAAGATCTGATACCACTGCATGCTGTCCTTGTTCCTCATGAAATGATCCCTTCATCACGCTGACTTCCTCAGCCTTGGGCCTTTTTTTGCTGATTCATGGAAAAACTCGATGTGTCATGTGTCGTCACACAGCCAGTGACATCACGGAAACAGGCGATGCAGTAAAGCAGCAGTGGAAAACGGGAACACAGCAACCTTCAGTGCAGGAGACGGAAAAAGGGAgtgagaaaggcagagagagatagggagaaagagaacaagTGGGAGAAATGGTAGAGCATAAATGAAATCTCAGTAGATGGTATGCCCTTAATTACAAAGTTGATAACATTGTCCTGTTGTATACCCTTACAGATCCTATTTTTCTACTGCTCCCTATAAGCCAGTTGTAGAAAATGAtcaataaaatgtgttatgatgCGAGTCTGTCCAAGTCGAAGAACCATTTTTCAAACCCGAGTGAGATGAGTCAGCTCCGCTAATCTGAACAGggttaaaaatgtatgtaaactCCTGTTTAATTTTCCACTGGCTGGACCTAAGGCCAGCATATATCTGCTGGATCTCCTTTTTCCATGTCACATCAGCCTGCCGCACTGAAGATACAGCTGCACACTAACGCTATACAGAGGATAAGCCATTCTGTCTTTTCTGCAAGAACACGCAACTAATCAGCATGCAACCTTACATGATCATTCATCATCATGTTATTGCAGCAGAATATTACATATACTGCTGTTACTGAGAGCCAACCTACAAGAAAGATCTGCTGCATGGAATACTGtgaattctaaaaaaaaaaaacagaaatcaccATAAAATTTCTGAATAAAGTGCTGAATAATGAAAGTCTCCAATTACTCCATAAGCTAAATAGCTGACCATATGCCAGTTTAACTTTTTCACCGTTGTAACTACACTGTTGtcactgtaatactgtaatgaTTACGGTTAGAAGGTTGCTCAGGAGCCCCTCAGTTGCTCAGTAGTCAGTGTAGGtcctgtctgcctgtcagcAGCTACATCTGGCTACTGGGTCTCTAATGggcttcattcattcaatctTCTGACAAATGTACAGCATCTCCAAGACCCAAACACAAGTTTCATAATCCACTGAAAGGTAGCAGCTTCTATCTGTCACTTTGAACGATTTGAGTGATAAAGGAAGAGTGAGAAAGGAAGCATTATGTAAGAAAACTGGCTTTTAAATTCAATGATGTGTAGCATGTGGTTTATGGGATACTTGCACGGcactaataaaacacaaagatcGATGTTGCAAATGAGTCTGTGAGagttaaagcaataaaaaaaagaaataa
>XR_003404659.2
AGCCCAGTGAATTTATGCTGATAGAAAtggggtggagagagagagctgtcaGCTGCGAACATCTTAATCAAACCTCCGACTACATTCCTCGGTTCTGAAGGCACAAACCTTAAACAGATTCGGTTCATTTACAGGCGACCCTCTGCCTCTAACCTGAGGTCAGCACTGgtgtaatgtaaacaatgcGAGACGAGGTAGTTCAGGCACGGCCCCGAAATGCAGCTGGAATCTGGAAGCGTGAACAAGCAAGCAGCCGACATTGCAGACTGACACATCGGGGTGCGCGCGAGAGCAGCGCGAGAGCAGCGCGAGCTCCACACGGCTGATAAAGCGGGACCGAGAGGGCGGCAGATGGCCAGCGCGAGGGGATGAGATCACTCACAGAAGTAGACTTTTTCTGTAATCCGGTGGGCCGTGTAACGGCAAGCGCGCGTGTACTTTAGTATTAAACCGCCTCTTTGTCCTCTTTGTGTGGTTTTAGCGAAGCAGAAGTGAAGCGAGGAGAGAGAGCTCGGAACTGTTAGCGCACAACCGGGGACGAGGCTGGGACTCCGGACACGCAGGGAAGAAATTCAGTTTGGAGACATGGCCTTTTCCTCCTCAATGAATGACCTTCTCCTCACCCAGccattcagaaaaaaagtgaCAGTAAAAGACAGCTCCCGGGATAGGACAGATCAAAATGAAGACCCGCCCCTCCACCCTTACTGCTCCCGCCTCTCTTTTAAAAGGTCCACCTGGCAGCATGTGACCCAATTACAGCACGGGAGATAAAAAGGGCACAGTGTACAGTGAAAATTCTGAACCAGCCACACAGAGACTGAAAAAGTGTTATGGGAAATAATGAATAGGAGAAAGTATTTCAAGAAAGACTGACAGATTTCTTGAGACAGTTCCACATAATTGTCACCTGTTCTCAAGGTGATGGGTAAATTCCTGCGCTCTTTAAGAAACTGAGACTGTGGAAGTGAGGTCGCTGGAATCACAGGGAGAAGAGAAATCAGACAGAGTAAGTAGAGAATTTAACTGGGGAAATGACTGAGGAGGGGTTATGGACATGTATTGCATGCCATGTCACGATTGCGAAATTGCTTGCCAGGTTATGACAGCCAAGTGAGGAATAGGTTTgtgggtagtgtgtgtgtgtgtgtgtgttggtgggggAACAGCTTCTGTAAAAGGAGAAATtgaagagaggaagacagaggcAGGACGGCTTCCTCTACACATCCTCATCACTGATGCCATTTCATCTCTACTTTCCTTCATGCATAAAAGGCAGGTTTTTATTCTTACATGTTTTCAAGCTGATGGCCTTTTTCAAGATGTGCCTTGGTCTCAACTTGGACTTTATTCAAATTCCATTTCATCTCTTGGGGGTAACcttataattacattacaaattCTGCCTCTGCCATATTATGTTCGTTAGTTCAAAGGTACTGAGGTGTATAAAGAGGTACAACAAACTGAAGTAGAATCTTTACTGAGGCACTTCTATAACAAGGTAGTGCTggataattaattataatatcatttgtgtgtatttgccAGTCAGTGAGTGCTTCCATTCTACCAAATGAGATCAAATTTTTAACAGTTGAAATTGTAGCAACCGACACTTTTGCTCATATTAAAGGATTTCATTTAAATGGAACATTTGTTTCAGCTAATGTGATGTTCATTATTAGTACAAATAATGAATTTCATTATGTGATTTATGCATATC
>XR_003404660.2
AGCCCAGTGAATTTATGCTGATAGAAAtggggtggagagagagagctgtcaGCTGCGAACATCTTAATCAAACCTCCGACTACATTCCTCGGTTCTGAAGGCACAAACCTTAAACAGATTCGGTTCATTTACAGGCGACCCTCTGCCTCTAACCTGAGGTCAGCACTGgtgtaatgtaaacaatgcGAGACGAGGTAGTTCAGGCACGGCCCCGAAATGCAGCTGGAATCTGGAAGCGTGAACAAGCAAGCAGCCGACATTGCAGACTGACACATCGGGGTGCGCGCGAGAGCAGCGCGAGAGCAGCGCGAGCTCCACACGGCTGATAAAGCGGGACCGAGAGGGCGGCAGATGGCCAGCGCGAGGGGATGAGATCACTCACAGAAGTAGACTTTTTCTGTAATCCGGTGGGCCGTGTAACGGCAAGCGCGCGTGTACTTTAGTATTAAACCGCCTCTTTGTCCTCTTTGTGTGGTTTTAGCGAAGCAGAAGTGAAGCGAGGAGAGAGAGCTCGGAACTGTTAGCGCACAACCGGGGACGAGGCTGGGACTCCGGACACGCAGGGAAGAAATTCAGTTTGGAGACATGGCCTTTTCCTCCTCAATGAATGACCTTCTCCTCACCCAGccattcagaaaaaaagtgaCAGTAAAAGACAGCTCCCGGGATAGGACAGATCAAAATGAAGACCCGCCCCTCCACCCTTACTGCTCCCGCCTCTCTTTTAAAAGGTCCACCTGGCAGCATGTGACCCAATTACAGCACGGGAGATAAAAAGGGCACAGTGTACAGTGAAAATTCTGAACCAGCCACACAGAGACTGAAAAAGTGTTATGGGAAATAATGAATAGGAGAAAGTATTTCAAGAAAGACTGACAGATTTCTTGAGACAGTTCCACATAATTGTCACCTGTTCTCAAGGTGATGGGTAAATTCCTGCGCTCTTTAAGAAACTGAGACTGTGGAAGTGAGGTCGCTGGAATCACAGGGAGAAGAGAAATCAGACAGAtgtgtgtgtgtgtgtgtgttggtgggggAACAGCTTCTGTAAAAGGAGAAATtgaagagaggaagacagaggcAGGACGGCTTCCTCTACACATCCTCATCACTGATGCCATTTCATCTCTACTTTCCTTCATGCATAAAAGGCAGGTTTTTATTCTTACATGTTTTCAAGCTGATGGCCTTTTTCAAGATGTGCCTTGGTCTCAACTTGGACTTTATTCAAATTCCATTTCATCTCTTGGGGGTAACcttataattacattacaaattCTGCCTCTGCCATATTATGTTCGTTAGTTCAAAGGTACTGAGGTGTATAAAGAGGTACAACAAACTGAAGTAGAATCTTTACTGAGGCACTTCTATAACAAGGTAGTGCTggataattaattataatatcatttgtgtgtatttgccAGTCAGTGAGTGCTTCCATTCTACCAAATGAGATCAAATTTTTAACAGTTGAAATTGTAGCAACCGACACTTTTGCTCATATTAAAGGATTTCATTTAAATGGAACATTTGTTTCAGCTAATGTGATGTTCATTATTAGTACAAATAATGAATTTCATTATGTGATTTATGCAT
>XR_003404661.2
TAAAGCACAGCCCAGTGAATTTATGCTGATAGAAAtggggtggagagagagagctgtcaGCTGCGAACATCTTAATCAAACCTCCGACTACATTCCTCGGTTCTGAAGGCACAAACCTTAAACAGATTCGGTTCATTTACAGGCGACCCTCTGCCTCTAACCTGAGGTCAGCACTGgtgtaatgtaaacaatgcGAGACGAGGTAGTTCAGGCACGGCCCCGAAATGCAGCTGGAATCTGGAAGCGTGAACAAGCAAGCAGCCGACATTGCAGACTGACACATCGGGGTGCGCGCGAGAGCAGCGCGAGAGCAGCGCGAGCTCCACACGGCTGATAAAGCGGGACCGAGAGGGCGGCAGATGGCCAGCGCGAGGGGATGAGATCACTCACAGAACGAAGCAGAAGTGAAGCGAGGAGAGAGAGCTCGGAACTGTTAGCGCACAACCGGGGACGAGGCTGGGACTCCGGACACGCAGGGAAGAAATTCAGTTTGGAGACATGGCCTTTTCCTCCTCAATGAATGACCTTCTCCTCACCCAGccattcagaaaaaaagtgaCAGTAAAAGACAGCTCCCGGGATAGGACAGATCAAAATGAAGACCCGCCCCTCCACCCTTACTGCTCCCGCCTCTCTTTTAAAAGGTCCACCTGGCAGCATGTGACCCAATTACAGCACGGGAGATAAAAAGGGCACAGTGTACAGTGAAAATTCTGAACCAGCCACACAGAGACTGAAAAAGTGTTATGGGAAATAATGAATAGGAGAAAGTATTTCAAGAAAGACTGACAGATTTCTTGAGACAGTTCCACATAATTGTCACCTGTTCTCAAGGTGATGGGTAAATTCCTGCGCTCTTTAAGAAACTGAGACTGTGGAAGTGAGGTCGCTGGAATCACAGGGAGAAGAGAAATCAGACAGAGTAAGTAGAGAATTTAACTGGGGAAATGACTGAGGAGGGGTTATGGACATGTATTGCATGCCATGTCACGATTGCGAAATTGCTTGCCAGGTTATGACAGCCAAGTGAGGAATAGGTTTgtgggtagtgtgtgtgtgtgtgtgtgttggtgggggAACAGCTTCTGTAAAAGGAGAAATtgaagagaggaagacagaggcAGGACGGCTTCCTCTACACATCCTCATCACTGATGCCATTTCATCTCTACTTTCCTTCATGCATAAAAGGCAGGTTTTTATTCTTACATGTTTTCAAGCTGATGGCCTTTTTCAAGATGTGCCTTGGTCTCAACTTGGACTTTATTCAAATTCCATTTCATCTCTTGGGGGTAACcttataattacattacaaattCTGCCTCTGCCATATTATGTTCGTTAGTTCAAAGGTACTGAGGTGTATAAAGAGGTACAACAAACTGAAGTAGAATCTTTACTGAGGCACTTCTATAACAAGGTAGTGCTggataattaattataatatcatttgtgtgtatttgccAGTCAGTGAGTGCTTCCATTCTACCAAATGAGATCAAATTTTTAACAGTTGAAATTGTAGCAACCGACACTTTTGCTCATATTAAAGGATTTCATTTAAATGGAACATTTGTTTCAGCTAATGTGATGTTCATTATTAGTACAAATAATGAATTTCATTATGTGATTTATGCATATC
>XR_004579507.1
AAAGCACAGCCCAGTGAATTTATGCTGATAGAAAtggggtggagagagagagctgtcaGCTGCGAACATCTTAATCAAACCTCCGACTACATTCCTCGGTTCTGAAGGCACAAACCTTAAACAGATTCGGTTCATTTACAGGCGACCCTCTGCCTCTAACCTGAGGTCAGCACTGgtgtaatgtaaacaatgcGAGACGAGGTAGTTCAGGCACGGCCCCGAAATGCAGCTGGAATCTGGAAGCGTGAACAAGCAAGCAGCCGACATTGCAGACTGACACATCGGGGTGCGCGCGAGAGCAGCGCGAGAGCAGCGCGAGCTCCACACGGCTGATAAAGCGGGACCGAGAGGGCGGCAGATGGCCAGCGCGAGGGGATGAGATCACTCACAGAAGTAGACTTTTTCTGTAATCCGGTGGGCCGTGTAACGGCAAGCGCGCGTGTACTTTAGTATTAAACCGCCTCTTTGTCCTCTTTGTGTGGTTTTAGCGAAGCAGAAGTGAAGCGAGGAGAGAGAGCTCGGAACTGTTAGCGCACAACCGGGGACGAGGCTGGGACTCCGGACACGCAGGGAAGAAATTCAGTTTGGAGACATGGCCTTTTCCTCCTCAATGAATGACCTTCTCCTCACCCAGccattcagaaaaaaagtgaCAGTAAAAGACAGCTCCCGGGATAGGACAGATCAAAATGAAGACCCGCCCCTCCACCCTTACTGCTCCCGCCTCTCTTTTAAAAGGTCCACCTGGCAGCATGTGACCCAATTACAGCACGGGAGATAAAAAGGGCACAGTGTACAGTGAAAATTCTGAACCAGCCACACAGAGACTGAAAAAGTGTTATGGGAAATAATGAATAGGAGAAAGTATTTCAAGAAAGACTGACAGATTTCTTGAGACAGTTCCACATAATTGTCACCTGTTCTCAAGGTGATGGGTAAATTCCTGCGCTCTTTAAGAAACTGAGACTGTGGAAGTGAGGTCGCTGGAATCACAGGGAGAAGAGAAATCAGACAGAGTTATGACAGCCAAGTGAGGAATAGGTTTgtgggtagtgtgtgtgtgtgtgtgtgttggtgggggAACAGCTTCTGTAAAAGGAGAAATtgaagagaggaagacagaggcAGGACGGCTTCCTCTACACATCCTCATCACTGATGCCATTTCATCTCTACTTTCCTTCATGCATAAAAGGCAGGTTTTTATTCTTACATGTTTTCAAGCTGATGGCCTTTTTCAAGATGTGCCTTGGTCTCAACTTGGACTTTATTCAAATTCCATTTCATCTCTTGGGGGTAACcttataattacattacaaattCTGCCTCTGCCATATTATGTTCGTTAGTTCAAAGGTACTGAGGTGTATAAAGAGGTACAACAAACTGAAGTAGAATCTTTACTGAGGCACTTCTATAACAAGGTAGTGCTggataattaattataatatcatttgtgtgtatttgccAGTCAGTGAGTGCTTCCATTCTACCAAATGAGATCAAATTTTTAACAGTTGAAATTGTAGCAACCGACACTTTTGCTCATATTAAAGGATTTCATTTAAATGGAACATTTGTTTCAGCTAATGTGATGTTCATTATTAGTACAAATAATGAATTTCATTATGTGATTTATGCATATC

Function

GO:

id name namespace
GO:0016769 transferase activity, transferring nitrogenous groups molecular_function
GO:0008483 transaminase activity molecular_function

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU25540 True 2555 lncRNA 0.32 7 4245757 4255362
XR_003404659.2 False 1729 lncRNA 0.45 3 4249442 4255184
XR_003404660.2 False 1599 lncRNA 0.45 4 4249445 4255184
XR_003404661.2 False 1642 lncRNA 0.45 4 4249442 4255192
XR_004579507.1 False 1646 lncRNA 0.45 4 4249442 4255191

Neighbor

gene id symbol gene type direction distance location
cldn10a cldn10a,LOC108272592,LOC108436398,LOC107551926,LOC107581434,LOC107659956,LOC107706622 coding downstream 206473 4034071 ~ 4039284 (-)
si:busm1-52i16.2 LOC108272376 coding downstream 219779 4023790 ~ 4025978 (-)
si:ch211-181l5.2 LOC108273231 coding downstream 237180 4004622 ~ 4008577 (-)
stx16 stx16,LOC107708146,LOC107685804,LOC107554194 coding downstream 286938 3938000 ~ 3958819 (-)
tubb1 tubb1,LOC107685846,LOC107554186,LOC107666034,LOC107729746 coding downstream 400033 3839963 ~ 3845724 (-)
prelid3b prelid3b,LOC107749404,LOC107556737,LOC103464385 coding upstream 103758 4359120 ~ 4365171 (-)
LOC117596284 NA coding upstream 192005 4447367 ~ 4447479 (-)
LOC117596286 NA coding upstream 202974 4458336 ~ 4458447 (-)
LOC113545959 NA coding upstream 220490 4475852 ~ 4483914 (-)
igfbp2a LOC108273244,LOC108438161 coding upstream 335022 4590384 ~ 4618467 (-)
G21413 NA non-coding downstream 1321 4169002 ~ 4244436 (-)
G21422 NA non-coding downstream 13662 4192003 ~ 4232095 (-)
G21417 NA non-coding downstream 91861 4146736 ~ 4153896 (-)
G21333 ddx3x,LOC108272611,LOC103389314,LOC100708206,LOC101487926 non-coding downstream 117913 4122995 ~ 4127844 (-)
G21341 NA non-coding downstream 134103 4111282 ~ 4111654 (-)
G21441 NA non-coding upstream 16447 4271809 ~ 4272029 (-)
G21486 NA non-coding upstream 98737 4354099 ~ 4354315 (-)
G21546 NA non-coding upstream 171831 4427193 ~ 4429341 (-)
G21552 rabl3 non-coding upstream 187494 4442856 ~ 4443450 (-)
G21554 NA non-coding upstream 190441 4445803 ~ 4446215 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other downstream 467769 3750018 ~ 3777988 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other downstream 508871 3715807 ~ 3736886 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other downstream 874603 3348308 ~ 3371154 (-)
LOC113545802 NA other downstream 1612077 2604654 ~ 2633680 (-)
slc9a7 slc9a7,LOC107711095,LOC107673530,LOC107753405 other downstream 2423089 1756160 ~ 1822668 (-)
G21434 NA other upstream 1306 4256668 ~ 4257087 (-)
trnaf-gaa_14 NA other upstream 76737 4332099 ~ 4332171 (-)
obsl1a obsl1 other upstream 557913 4813275 ~ 4902011 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other upstream 856100 5111462 ~ 5201212 (-)
LOC113533127 NA other upstream 1150605 5405967 ~ 5414086 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G497351 NA non-coding CI01000340 null 19491924 ~ 19494481 (-)
mexican tetra (Astyanax mexicanus) G109707 NA unknown NC_035909.1 CM008312.1 8550114 ~ 8561274 (+)