G21469


Basic Information

Item Value
gene id G21469
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4336254 ~ 4336636 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU25604
ctttcatgttgaccttctgcaagtttctcccatctccacacACGATATCTGAAGCTCAACCAGAGTGACcattgggttcttggtcacTTCTCTTACCAAGGCCCTTCTCCCCGAGTTGCTCAGTTTGACCATGCGGCCTGCTCCAAGAAGAGTCCTggttgttccaaacttcttccatttaagaattatagAGGCTCTGTGCTCTTGGGAACCTTCCATGCAGCAGAATTTTTTTGTAGCCTATCCCAGATCTGTGCCTTGACACAATCctctctctgagctctgcaggcagttcctttgacctcatggcttggtttttgctctgatatgcattttcagctgttagaccttatatagacaggtgtgtggctttccaaatcatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25604 True 383 lncRNA 0.46 1 4336254 4336636

Neighbor

gene id symbol gene type direction distance location
LOC113545870 kdm6a,LOC108272609,LOC108436446,LOC107750839,LOC107564831,LOC107703100,LOC106528445,LOC102291812 coding upstream 91817 4135052 ~ 4244437 (+)
ddx3xb LOC108272611,LOC108412429,LOC107750829 coding upstream 208396 4112174 ~ 4127858 (+)
LOC113545970 usp9x,LOC108272755,LOC108412426 coding upstream 225931 4060891 ~ 4110323 (+)
dzip1 NA coding upstream 330919 3969785 ~ 4005335 (+)
gnas gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173 coding upstream 415646 3854960 ~ 3920608 (+)
LOC113545914 NA coding downstream 55870 4392506 ~ 4425544 (+)
LOC117599286 rabl3 coding downstream 106175 4442811 ~ 4443641 (+)
igfbp5a LOC108273291 coding downstream 230098 4566734 ~ 4587196 (+)
stk11ip stk11ip,LOC107663072 coding downstream 314370 4651006 ~ 4692028 (+)
LOC113545978 NA coding downstream 323373 4660009 ~ 4660123 (+)
G21297 NA non-coding upstream 131291 4202556 ~ 4204963 (+)
G21293 NA non-coding upstream 179934 4156000 ~ 4156320 (+)
G21281 NA non-coding upstream 224550 4111200 ~ 4111704 (+)
G21271 NA non-coding upstream 322357 4013670 ~ 4013897 (+)
G21269 NA non-coding upstream 323574 4012375 ~ 4012680 (+)
G21475 NA non-coding downstream 4491 4341127 ~ 4341340 (+)
LOC113545955 NA non-coding downstream 92771 4429407 ~ 4434736 (+)
G21514 NA non-coding downstream 120636 4457272 ~ 4457846 (+)
G21577 NA non-coding downstream 189287 4525923 ~ 4526332 (+)
G21629 NA non-coding downstream 321578 4658214 ~ 4663379 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other upstream 8394 4275073 ~ 4327860 (+)
LOC113545962 NA other upstream 593948 3728652 ~ 3742306 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 748611 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 757946 3550225 ~ 3578308 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 968967 3340446 ~ 3367287 (+)
trnah-gug_1 NA other downstream 15041 4351677 ~ 4351748 (+)
spega speg other downstream 417630 4754266 ~ 4759645 (+)
G21835 NA other downstream 751498 5088134 ~ 5088578 (+)
G21901 NA other downstream 871710 5208346 ~ 5208864 (+)
mych LOC108272607 other downstream 1157086 5493722 ~ 5552974 (+)

Expression


Co-expression Network