LOC113545955


Basic Information

Item Value
gene id LOC113545955
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4429407 ~ 4434736 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU25662
GCAACGAACGTAAACTAGTGCTCTGGGTTTGATGCCATTGTTCTGAATTTGGCGAGGACGTTTATGGATTGCATTCGTGAAGTGGATCGGGTTTGATCACGTTTGGGACACGTAATGCACACCATTGGAGAAGACTATGAATACACTGATACATCCTTTAAAAACTGCCAACTGAAAGCCACGAAATGAGGGCTATCTTCCAAAAAGCCTTCAAAATGAGCGCTTTGACAATGTAGCAGCCAAGATAAACAGCCTTTCTGGGGCGCAGCCTTCCGTTAGAGAAACAAACCTCCATTAGAGTGTGGGCTGTGAAGAAGAATATCACTGGTTGGATGAACGAATACGCCCCTTACTTTGAGTCTGACCGAGAGTGGCAAGTGTGCTCAAAACCAAATTTGTGTTATACAACATTCATGTACAAGAACCACATCTCTATCCACCTGTAACCTAAAAGAAGCAAGTTCGAATAAAAGAGAATGTAGATGGAGAACAAAGGACTCTAACACACGCATAATAACATTCGCCCCACGGTGATCATAACTCCAAACTAGCAGCACAAACTTAATCCTTCGTTACACACTGGTTGTTCAAGCCAGATCTGGTGATTACTGTGAACGAAGATGGCTCGTGCTCCATCAGACAGAGACTTCAGACCAGAGGATGTTCGTTCATGCCGCCAAAGGAATCCTCCTGACTG
>XR_004579534.1
TTTTGTGTGAGCAAAGCAACGAACGTAAACTAGTGCTCTGGGTTTGATGCCATTGTTCTGAATTTGGCGAGGACGTTTATGGATTGCATTCGTGAAGTGGATCGGGTTTGATCACGTTTGGGACACGTAATGCACACCATTGGAGAAGACTATGAATACACTGATACATCCTTTAAAAACTGCCAACTGAAAGCCACGAAATGAGGGCTATCTTCCAAAAAGCCTTCAAAATGAGCGCTTTGACAATGTAGCAGCCAAGATAAACAGCCTTTCTGGGGCGCAGCCTTCCGTTAGAGAAACAAACCTCCATTAGAGTGTGGGCTGTGAAGAAGAATATCACTGGTTGGATGAACGAATACGCCCCTTACTTTGAGTCTGACCGAGAGTGGCAAGTGTGCTCAAAACCAAATTTGTGTTATACAACATTCATGTACAAGAACCACATCTCTATCCACCTGTAACCTAAAAGAAGCAAGTTCGAATAAAAGAGAATGTAGATGGAGAACAAAGGACTCTAACACACGCATAATAACATTCGCCCCACGGTGATCATAACTCCAAACTAGCAGCACAAACTTAATCCTTCGTTACACACTGGTTGTTCAAGCCAGATCTGGTGATTACTGTGAACGAAGATGGCTCGTGCTCCATCAGACAGAGACTTCAGACCAGAGGATGTTCGTTCATGCCGCCAAAGGAATCCTCCTGACTGGCTAAAGGAATATGAGGTTGATCTTCTACGTCCAGTAGTATTTGATCAACCCAGTCAACATTTCTTGGAGATCCTATCCTATCCTACAGCGCAAGTACTGGATACTTCAGGGCTGTGAAGCTGTTCGGAAAGAGCAGCGTGCCCGTGTGGAATGTCAAAGCTGGAGAGCCCAACCAGTGCTTCCTCAGATGGCAGACCTACCTCCTGCCCGCCTCCATGTGCATTGCTCTGCATTCTTCTTTACTGCAATGGGCTGCTTTGGCCCCTTCCTAGTTAAAATAGGTCACCGTAATGAAAAGAAATGGGGGGGGTTCTTATTTAAATGCTTAACTACAGGGACTAATTTCAGAAGAAGTGAGCGAGAACTCCACGACACTTTCAAAGCCATGCACCCCAGCACCTGGCCGAGCACCAGATCAAGTTCATCTTCAACCCCCCTAATGCACCGCACTTCGGAGGTTCCTGGGAAAGGGAAATCCATTCCATAAAGACAGTCTTAAATGCCACCCTCAATGCCCAGAGTGTGACTGAGGAAATGTTCAACACCAACCTTATTGAAATCAAGGGAATCCTGAATTCCCAGGCCCTAGGTTATGTCTCTTCTGATGTGGCTGACCCAGACCCAATTACCCCAAATCTCCTTCTGATGGGGTGGCTAGATCCTTCATTGCCACAAAACATTTACCATGATTCCAATCTACTCAGATGGTTGCGATGGAGGGTCTGTCAAATCCTTGCTGACAGATTCTGGTCACAGTTCCTAAAGAACTACTTGCCTGCATCACAAACACAGGAGAAATGGCAAACAGACACAGATCTCCTCCAACCAGACACAGTGGTACTCATAGTGGACCCTCAACTGCCCAGAGCATTATGGCCAGTTGGACGGATAATCAAGATGTTCACAGGAGTTGATGGGCAAATATGTACAGCAGAAGATAAGGTGAACGATTGAACCTATGTCAGACCTATCAGCCGTCTGAGCCGCCTCCCCGCTATCTCAGATGATGAGAACAAAGGGTTGCCCCAATGACTGCAAATTTGCGGAACAAATTTGGGGGTGGCTGTTGGAAAGGAAAGTGCAAGCCAGTCCAGCAGAGGGCGCTAACAGACTGTATTATCATATGACTGCCTGAAATAATACTGTGTTCTTATGCAGAGGACAGTTTTCTAGTGCAGCGACGGGCAGAAGGAATACCGGTACTTTAAGTGTTGTTTATACAGTTAATCTTGCTTTGGTGGATTTGTGCGTGCAGAAATTGGATGTATTGTCATATTTACAcactatatgtatatgtttgtCAGGATGATCAACTTCATTGTGCATTTGGGCCGTTCACTGTTTGCCGTCAAATGACTGAATGATTCAGCCCCTTCTGCTTACCGTCAGTTTGAGATGTATACAGTTGACACTAACATTTGCATCTTGCATTGTAATTTTTGTTAAGTATCAGCAACTTTatgttattttgaaaaataagaaggattatttattgttgttattaatgcAGTTTCTATGATTCATATGATGTGTGGTACAGCTCGTTCCTTAGTCATATTGTTTTCATATAGTTTCTTTAAGAGCGTATTATTGCCTGTTTGaatatttctacattataaGACAATCTAATAGCTATTTACTGTATTGTTATTAATGATGAATGCTTGTTGTGACTGTACTATGAAAAGCtgttacatattattatttccttCTGTAGAACCACATCTCTATCCACctgtaacataaaataaaagagaatgtAGATGGAGAACAAAGGACTCGTGCATTCTAACAGATGCCCCACAGTGATAATAACTCCAACTCCAACAATCAACATAAACTTAAACCTTACAAGcagtaaccacttcatcctAGTCAGAGTTGCAgtggatcctgggaacactgggcatatGAAGGAATGCAcactgaatgggacaccagtccatcacagggctgCATACATATATGACGAGATAAATTATTATAGTTTGAGGGTTCTTTAAGTTAAATCCTGCATTAATGGGATCACGCTTTCTATTGGTTGTGCCGGTGGCAATGTTGCCCACTGAGCTGAACGATCTGCAGCAGAGCTAGGGAGAAATGCTATATGTGAGTCTTTTATGTTTTAGCTCCATGCTAGGagttaaaaatacatattttatatcaaatgTTGGACACAGTATGGGAAGGATTGCATACAATAGACAATGATTGATTTGTagagtgtgttttctgtgtataTGTGGAGCTCT

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko05202 Transcriptional misregulation in cancer

RNA

RNA id representative length rna type GC content exon number start site end site
TU25662 False 697 lncRNA 0.47 3 4429422 4432483
XR_004579534.1 True 2965 lncRNA 0.43 3 4429407 4434736

Neighbor

gene id symbol gene type direction distance location
LOC113545914 NA coding upstream 3863 4392506 ~ 4425544 (+)
LOC113545870 kdm6a,LOC108272609,LOC108436446,LOC107750839,LOC107564831,LOC107703100,LOC106528445,LOC102291812 coding upstream 184970 4135052 ~ 4244437 (+)
ddx3xb LOC108272611,LOC108412429,LOC107750829 coding upstream 301549 4112174 ~ 4127858 (+)
LOC113545970 usp9x,LOC108272755,LOC108412426 coding upstream 319084 4060891 ~ 4110323 (+)
dzip1 NA coding upstream 424072 3969785 ~ 4005335 (+)
LOC117599286 rabl3 coding downstream 8075 4442811 ~ 4443641 (+)
igfbp5a LOC108273291 coding downstream 131998 4566734 ~ 4587196 (+)
stk11ip stk11ip,LOC107663072 coding downstream 216270 4651006 ~ 4692028 (+)
LOC113545978 NA coding downstream 225273 4660009 ~ 4660123 (+)
LOC113545806 NA coding downstream 273851 4708587 ~ 4717273 (+)
G21475 NA non-coding upstream 88067 4341127 ~ 4341340 (+)
G21469 NA non-coding upstream 92771 4336254 ~ 4336636 (+)
G21297 NA non-coding upstream 224444 4202556 ~ 4204963 (+)
G21293 NA non-coding upstream 273087 4156000 ~ 4156320 (+)
G21281 NA non-coding upstream 317703 4111200 ~ 4111704 (+)
G21514 NA non-coding downstream 22536 4457272 ~ 4457846 (+)
G21577 NA non-coding downstream 91187 4525923 ~ 4526332 (+)
G21629 NA non-coding downstream 223478 4658214 ~ 4663379 (+)
G21763 NA non-coding downstream 373387 4808123 ~ 4808427 (+)
G21771 NA non-coding downstream 396167 4830903 ~ 4834058 (+)
trnah-gug_1 NA other upstream 77659 4351677 ~ 4351748 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other upstream 101547 4275073 ~ 4327860 (+)
LOC113545962 NA other upstream 687101 3728652 ~ 3742306 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 841764 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 851099 3550225 ~ 3578308 (+)
spega speg other downstream 319530 4754266 ~ 4759645 (+)
G21835 NA other downstream 653398 5088134 ~ 5088578 (+)
G21901 NA other downstream 773610 5208346 ~ 5208864 (+)
mych LOC108272607 other downstream 1058986 5493722 ~ 5552974 (+)
atp5f1e NA other downstream 1066909 5501645 ~ 5503231 (+)

Expression


Co-expression Network