G21577


Basic Information

Item Value
gene id G21577
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4525923 ~ 4526332 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU25744
CCTGTATCGTGTCCAAGGAATATTGAACCAGCATGGataccacagcattttacaGCGACATGCTATTCCATCTGGTCAGCGCCTTATTGGTCATTGCTTCATctttcaacaagacaatgacccaaagcatacttcCAAGCTGTGCAAGTCATATCTGGAGAAGAAACAGTCAGCCGGTGTCTTGTCTATCATGGAGTGGCCTGCCCAAtcacctgaccttaaccccattgagCTGCTATGGGAGGAACTGGACCGTGATGTCCGTAAGAAGTGTCCAACCAGTGTGAATCATCTTTGGGCAATCCTCCAGGAGGCTTGGGGTAATATATCAAGTCAATGTTTGAATAAACTGACTGCTCGGATGCCTAGAGTATGTAGAGCTGTAATAGCTGCTAATGGGGATTTCTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25744 True 410 lncRNA 0.46 1 4525923 4526332

Neighbor

gene id symbol gene type direction distance location
LOC117599286 rabl3 coding upstream 82282 4442811 ~ 4443641 (+)
LOC113545914 NA coding upstream 100379 4392506 ~ 4425544 (+)
LOC113545870 kdm6a,LOC108272609,LOC108436446,LOC107750839,LOC107564831,LOC107703100,LOC106528445,LOC102291812 coding upstream 281486 4135052 ~ 4244437 (+)
ddx3xb LOC108272611,LOC108412429,LOC107750829 coding upstream 398065 4112174 ~ 4127858 (+)
LOC113545970 usp9x,LOC108272755,LOC108412426 coding upstream 415600 4060891 ~ 4110323 (+)
igfbp5a LOC108273291 coding downstream 40402 4566734 ~ 4587196 (+)
stk11ip stk11ip,LOC107663072 coding downstream 124674 4651006 ~ 4692028 (+)
LOC113545978 NA coding downstream 133677 4660009 ~ 4660123 (+)
LOC113545806 NA coding downstream 182255 4708587 ~ 4717273 (+)
wbp4 wbp4 coding downstream 596388 5122720 ~ 5127596 (+)
G21514 NA non-coding upstream 68077 4457272 ~ 4457846 (+)
LOC113545955 NA non-coding upstream 91187 4429407 ~ 4434736 (+)
G21475 NA non-coding upstream 184583 4341127 ~ 4341340 (+)
G21469 NA non-coding upstream 189287 4336254 ~ 4336636 (+)
G21297 NA non-coding upstream 320960 4202556 ~ 4204963 (+)
G21629 NA non-coding downstream 131882 4658214 ~ 4663379 (+)
G21763 NA non-coding downstream 281791 4808123 ~ 4808427 (+)
G21771 NA non-coding downstream 304571 4830903 ~ 4834058 (+)
G21791 NA non-coding downstream 352877 4879209 ~ 4902000 (+)
LOC113545969 NA non-coding downstream 385471 4911803 ~ 4913793 (+)
trnah-gug_1 NA other upstream 174175 4351677 ~ 4351748 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other upstream 198063 4275073 ~ 4327860 (+)
LOC113545962 NA other upstream 783617 3728652 ~ 3742306 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 938280 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 947615 3550225 ~ 3578308 (+)
spega speg other downstream 227934 4754266 ~ 4759645 (+)
G21835 NA other downstream 561802 5088134 ~ 5088578 (+)
G21901 NA other downstream 682014 5208346 ~ 5208864 (+)
mych LOC108272607 other downstream 967390 5493722 ~ 5552974 (+)
atp5f1e NA other downstream 975313 5501645 ~ 5503231 (+)

Expression


Co-expression Network